Strain Fitness in Sinorhizobium meliloti 1021 around SMa1134

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1131 and SMa1132 are separated by 428 nucleotidesSMa1132 and SMa1134 are separated by 47 nucleotidesSMa1134 and SMa1136 are separated by 295 nucleotidesSMa1136 and SMa1138 are separated by 51 nucleotides SMa1131: SMa1131 - Metallo-beta-lactamase superfamily protein, at 616,469 to 618,064 SMa1131 SMa1132: SMa1132 - hypothetical protein, at 618,493 to 618,882 SMa1132 SMa1134: SMa1134 - hypothetical protein, at 618,930 to 619,556 SMa1134 SMa1136: SMa1136 - hypothetical protein, at 619,852 to 620,313 SMa1136 SMa1138: SMa1138 - hypothetical protein, at 620,365 to 620,856 SMa1138 Position (kb) 618 619 620Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 618.082 kb on - strandat 618.082 kb on - strandat 618.096 kb on + strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.097 kb on - strandat 618.153 kb on + strandat 618.262 kb on + strandat 618.263 kb on - strandat 618.407 kb on - strandat 618.633 kb on - strand, within SMa1132at 618.698 kb on + strand, within SMa1132at 618.699 kb on - strand, within SMa1132at 618.699 kb on - strand, within SMa1132at 618.772 kb on + strand, within SMa1132at 618.773 kb on - strand, within SMa1132at 618.773 kb on - strand, within SMa1132at 618.773 kb on - strand, within SMa1132at 618.775 kb on - strand, within SMa1132at 618.856 kb on + strandat 618.856 kb on + strandat 618.857 kb on - strandat 618.857 kb on - strandat 618.880 kb on + strandat 618.881 kb on - strandat 619.073 kb on - strand, within SMa1134at 619.073 kb on - strand, within SMa1134at 619.075 kb on + strand, within SMa1134at 619.076 kb on - strand, within SMa1134at 619.230 kb on + strand, within SMa1134at 619.409 kb on + strand, within SMa1134at 619.409 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.465 kb on + strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.466 kb on - strand, within SMa1134at 619.470 kb on + strand, within SMa1134at 619.471 kb on - strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.485 kb on + strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 619.486 kb on - strand, within SMa1134at 620.024 kb on + strand, within SMa1136at 620.050 kb on + strand, within SMa1136at 620.051 kb on - strand, within SMa1136at 620.115 kb on - strand, within SMa1136at 620.130 kb on + strand, within SMa1136at 620.131 kb on - strand, within SMa1136at 620.294 kb on + strandat 620.305 kb on + strandat 620.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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618,082 - -1.6
618,082 - +0.1
618,096 + -0.6
618,097 - -1.1
618,097 - -0.6
618,097 - -0.3
618,097 - -1.0
618,097 - +0.3
618,153 + +1.1
618,262 + +0.5
618,263 - -0.8
618,407 - -0.6
618,633 - SMa1132 0.36 -0.4
618,698 + SMa1132 0.53 +0.2
618,699 - SMa1132 0.53 -0.4
618,699 - SMa1132 0.53 -0.2
618,772 + SMa1132 0.72 -2.7
618,773 - SMa1132 0.72 +0.2
618,773 - SMa1132 0.72 +1.5
618,773 - SMa1132 0.72 +0.3
618,775 - SMa1132 0.72 -0.1
618,856 + -0.2
618,856 + -0.1
618,857 - -3.8
618,857 - +0.2
618,880 + -0.5
618,881 - +0.1
619,073 - SMa1134 0.23 +0.4
619,073 - SMa1134 0.23 +0.5
619,075 + SMa1134 0.23 -0.3
619,076 - SMa1134 0.23 +0.1
619,230 + SMa1134 0.48 +2.7
619,409 + SMa1134 0.76 +0.2
619,409 + SMa1134 0.76 +1.5
619,465 + SMa1134 0.85 +0.0
619,465 + SMa1134 0.85 -0.2
619,465 + SMa1134 0.85 +1.8
619,465 + SMa1134 0.85 -1.2
619,465 + SMa1134 0.85 -0.6
619,466 - SMa1134 0.85 +1.3
619,466 - SMa1134 0.85 -0.4
619,466 - SMa1134 0.85 -0.2
619,466 - SMa1134 0.85 +0.5
619,466 - SMa1134 0.85 +0.9
619,466 - SMa1134 0.85 +0.5
619,470 + SMa1134 0.86 -1.4
619,471 - SMa1134 0.86 -1.5
619,485 + SMa1134 0.89 -0.0
619,485 + SMa1134 0.89 -0.5
619,485 + SMa1134 0.89 +0.9
619,485 + SMa1134 0.89 -0.0
619,486 - SMa1134 0.89 +0.8
619,486 - SMa1134 0.89 +0.5
619,486 - SMa1134 0.89 -2.2
619,486 - SMa1134 0.89 +0.0
619,486 - SMa1134 0.89 -0.9
620,024 + SMa1136 0.37 -1.0
620,050 + SMa1136 0.43 +0.8
620,051 - SMa1136 0.43 +1.0
620,115 - SMa1136 0.57 +0.5
620,130 + SMa1136 0.60 +2.0
620,131 - SMa1136 0.60 +0.1
620,294 + +0.2
620,305 + -0.8
620,317 - -0.2

Or see this region's nucleotide sequence