Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1062 and SMa1063 overlap by 65 nucleotides SMa1063 and SMa1065 are separated by 51 nucleotides SMa1065 and SMa1067 are separated by 238 nucleotides
SMa1062: SMa1062 - hypothetical protein, at 581,350 to 582,180
SMa1062
SMa1063: SMa1063 - hypothetical protein, at 582,116 to 582,367
SMa1063
SMa1065: SMa1065 - hypothetical protein, at 582,419 to 583,207
SMa1065
SMa1067: SMa1067 - transcriptional regulator, at 583,446 to 584,192
SMa1067
Position (kb) 582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 581.429 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.560 kb on - strand, within SMa1062 at 581.586 kb on - strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.640 kb on - strand, within SMa1062 at 581.681 kb on + strand, within SMa1062 at 581.827 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 582.005 kb on + strand, within SMa1062 at 582.024 kb on - strand, within SMa1062 at 582.039 kb on - strand, within SMa1062 at 582.140 kb on + strand at 582.200 kb on - strand, within SMa1063 at 582.280 kb on + strand, within SMa1063 at 582.281 kb on - strand, within SMa1063 at 582.393 kb on - strand at 582.420 kb on + strand at 582.420 kb on + strand at 582.490 kb on - strand at 582.618 kb on + strand, within SMa1065 at 582.618 kb on + strand, within SMa1065 at 582.619 kb on - strand, within SMa1065 at 582.619 kb on - strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 583.175 kb on + strand at 583.175 kb on + strand at 583.193 kb on + strand at 583.194 kb on - strand at 583.194 kb on - strand at 583.227 kb on + strand at 583.227 kb on + strand at 583.249 kb on + strand at 583.305 kb on + strand at 583.305 kb on + strand at 583.305 kb on + strand at 583.306 kb on - strand at 583.346 kb on + strand at 583.347 kb on - strand at 583.390 kb on + strand at 583.391 kb on - strand at 583.391 kb on - strand at 583.445 kb on + strand at 583.445 kb on + strand at 583.445 kb on + strand at 583.445 kb on + strand at 583.445 kb on + strand at 583.445 kb on + strand at 583.487 kb on + strand at 583.487 kb on + strand at 583.487 kb on + strand at 583.487 kb on + strand at 583.487 kb on + strand at 583.488 kb on - strand at 583.665 kb on + strand, within SMa1067 at 583.665 kb on + strand, within SMa1067 at 583.666 kb on - strand, within SMa1067 at 583.689 kb on - strand, within SMa1067 at 583.739 kb on + strand, within SMa1067 at 583.740 kb on - strand, within SMa1067 at 583.791 kb on - strand, within SMa1067 at 583.906 kb on + strand, within SMa1067 at 583.968 kb on - strand, within SMa1067 at 584.016 kb on - strand, within SMa1067 at 584.075 kb on + strand, within SMa1067 at 584.076 kb on - strand, within SMa1067 at 584.115 kb on + strand, within SMa1067 at 584.116 kb on - strand, within SMa1067 at 584.116 kb on - strand, within SMa1067 at 584.116 kb on - strand, within SMa1067 at 584.116 kb on - strand, within SMa1067 at 584.121 kb on + strand at 584.122 kb on - strand at 584.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 581,429 + +0.2 581,429 + -0.9 581,429 + +0.1 581,560 - SMa1062 0.25 -0.1 581,586 - SMa1062 0.28 +0.8 581,639 + SMa1062 0.35 +0.7 581,639 + SMa1062 0.35 +2.0 581,639 + SMa1062 0.35 +0.3 581,640 - SMa1062 0.35 -1.6 581,681 + SMa1062 0.40 -0.5 581,827 - SMa1062 0.57 +0.9 581,984 - SMa1062 0.76 +0.5 581,984 - SMa1062 0.76 -0.5 582,005 + SMa1062 0.79 +0.3 582,024 - SMa1062 0.81 +2.0 582,039 - SMa1062 0.83 +0.2 582,140 + -0.4 582,200 - SMa1063 0.33 -1.1 582,280 + SMa1063 0.65 -0.9 582,281 - SMa1063 0.65 +0.2 582,393 - -0.3 582,420 + +0.4 582,420 + +0.0 582,490 - -2.1 582,618 + SMa1065 0.25 -0.8 582,618 + SMa1065 0.25 +0.5 582,619 - SMa1065 0.25 +1.1 582,619 - SMa1065 0.25 -1.0 582,900 + SMa1065 0.61 +0.2 582,900 + SMa1065 0.61 +0.4 582,900 + SMa1065 0.61 +1.5 582,900 + SMa1065 0.61 +0.1 582,901 - SMa1065 0.61 +3.7 582,901 - SMa1065 0.61 +0.0 582,901 - SMa1065 0.61 +3.7 582,901 - SMa1065 0.61 +1.4 582,901 - SMa1065 0.61 +2.3 582,901 - SMa1065 0.61 -0.8 583,175 + +0.9 583,175 + +0.3 583,193 + +0.1 583,194 - -0.2 583,194 - +1.1 583,227 + -0.4 583,227 + -1.4 583,249 + +1.3 583,305 + -0.8 583,305 + -1.4 583,305 + +0.5 583,306 - +0.8 583,346 + -0.0 583,347 - -0.4 583,390 + +0.2 583,391 - -0.9 583,391 - -0.9 583,445 + -0.0 583,445 + -1.0 583,445 + -0.0 583,445 + -0.2 583,445 + -1.3 583,445 + +0.4 583,487 + -0.3 583,487 + -0.1 583,487 + +0.1 583,487 + +0.3 583,487 + +0.3 583,488 - +4.7 583,665 + SMa1067 0.29 +0.4 583,665 + SMa1067 0.29 +0.7 583,666 - SMa1067 0.29 -2.7 583,689 - SMa1067 0.33 +2.1 583,739 + SMa1067 0.39 -1.0 583,740 - SMa1067 0.39 +1.5 583,791 - SMa1067 0.46 +0.9 583,906 + SMa1067 0.62 +0.7 583,968 - SMa1067 0.70 -1.7 584,016 - SMa1067 0.76 -0.7 584,075 + SMa1067 0.84 -0.4 584,076 - SMa1067 0.84 +0.0 584,115 + SMa1067 0.90 -0.4 584,116 - SMa1067 0.90 -0.7 584,116 - SMa1067 0.90 +0.6 584,116 - SMa1067 0.90 +0.7 584,116 - SMa1067 0.90 -0.4 584,121 + -0.2 584,122 - -0.3 584,191 - -0.6
Or see this region's nucleotide sequence