Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5024 and SMa0483 are separated by 831 nucleotides SMa0483 and SMa0485 are separated by 52 nucleotides
SMa5024: SMa5024 - hypothetical protein, at 262,378 to 262,674
SMa5024
SMa0483: SMa0483 - Phosphatase, at 263,506 to 264,432
SMa0483
SMa0485: SMa0485 - threonine synthase, at 264,485 to 265,939
SMa0485
Position (kb) 263
264
265 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 262.510 kb on + strand, within SMa5024 at 262.599 kb on - strand, within SMa5024 at 262.691 kb on + strand at 263.042 kb on + strand at 263.126 kb on + strand at 263.126 kb on + strand at 263.201 kb on + strand at 263.207 kb on - strand at 263.258 kb on + strand at 263.258 kb on + strand at 263.303 kb on + strand at 263.304 kb on - strand at 263.304 kb on - strand at 263.304 kb on - strand at 263.304 kb on - strand at 263.304 kb on - strand at 263.372 kb on + strand at 263.373 kb on - strand at 263.383 kb on + strand at 263.383 kb on + strand at 263.383 kb on + strand at 263.384 kb on - strand at 263.384 kb on - strand at 263.477 kb on - strand at 263.507 kb on + strand at 263.507 kb on + strand at 263.547 kb on + strand at 263.547 kb on + strand at 263.584 kb on - strand at 263.584 kb on - strand at 263.657 kb on + strand, within SMa0483 at 263.657 kb on + strand, within SMa0483 at 263.658 kb on - strand, within SMa0483 at 263.665 kb on + strand, within SMa0483 at 263.666 kb on - strand, within SMa0483 at 263.677 kb on + strand, within SMa0483 at 263.704 kb on + strand, within SMa0483 at 263.818 kb on + strand, within SMa0483 at 263.857 kb on - strand, within SMa0483 at 263.894 kb on - strand, within SMa0483 at 264.109 kb on + strand, within SMa0483 at 264.558 kb on - strand at 264.558 kb on - strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.559 kb on + strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.560 kb on - strand at 264.597 kb on - strand at 264.771 kb on + strand, within SMa0485 at 264.772 kb on - strand, within SMa0485 at 264.772 kb on - strand, within SMa0485 at 264.954 kb on + strand, within SMa0485 at 264.956 kb on + strand, within SMa0485 at 264.988 kb on + strand, within SMa0485 at 265.054 kb on + strand, within SMa0485 at 265.206 kb on + strand, within SMa0485 at 265.212 kb on + strand, within SMa0485 at 265.218 kb on + strand, within SMa0485
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 262,510 + SMa5024 0.44 +0.2 262,599 - SMa5024 0.74 +0.2 262,691 + +0.9 263,042 + +0.3 263,126 + +0.4 263,126 + +0.1 263,201 + +0.2 263,207 - +0.1 263,258 + -0.0 263,258 + +0.0 263,303 + +0.2 263,304 - -1.5 263,304 - -0.3 263,304 - +0.3 263,304 - -0.4 263,304 - +1.5 263,372 + +0.3 263,373 - -0.8 263,383 + +0.8 263,383 + -0.2 263,383 + +1.9 263,384 - -0.6 263,384 - +0.8 263,477 - -1.0 263,507 + +0.8 263,507 + +1.2 263,547 + +1.8 263,547 + -0.1 263,584 - -1.7 263,584 - -0.0 263,657 + SMa0483 0.16 -1.7 263,657 + SMa0483 0.16 -0.1 263,658 - SMa0483 0.16 +0.2 263,665 + SMa0483 0.17 -0.2 263,666 - SMa0483 0.17 -0.1 263,677 + SMa0483 0.18 -0.9 263,704 + SMa0483 0.21 -1.2 263,818 + SMa0483 0.34 +0.3 263,857 - SMa0483 0.38 +0.2 263,894 - SMa0483 0.42 -0.6 264,109 + SMa0483 0.65 -0.0 264,558 - -0.6 264,558 - -0.2 264,559 + +0.4 264,559 + -3.9 264,559 + +1.6 264,559 + -0.3 264,559 + +0.2 264,560 - -0.1 264,560 - +0.3 264,560 - -2.8 264,560 - +0.2 264,560 - +0.0 264,597 - -0.2 264,771 + SMa0485 0.20 +0.7 264,772 - SMa0485 0.20 +0.5 264,772 - SMa0485 0.20 +0.2 264,954 + SMa0485 0.32 -0.7 264,956 + SMa0485 0.32 -1.2 264,988 + SMa0485 0.35 +0.6 265,054 + SMa0485 0.39 +0.5 265,206 + SMa0485 0.50 -1.5 265,212 + SMa0485 0.50 -1.6 265,218 + SMa0485 0.50 +0.4
Or see this region's nucleotide sequence