Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21587

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21586 and SM_b21587 are separated by 151 nucleotidesSM_b21587 and SM_b21588 are separated by 142 nucleotides SM_b21586: SM_b21586 - glutathione synthetase, at 1,125,697 to 1,126,743 _b21586 SM_b21587: SM_b21587 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,126,895 to 1,127,857 _b21587 SM_b21588: SM_b21588 - sugar uptake ABC transporter ATP-binding protein, at 1,128,000 to 1,129,517 _b21588 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1125.954 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1125.954 kb on - strand, within SM_b21586at 1126.016 kb on - strand, within SM_b21586at 1126.016 kb on - strand, within SM_b21586at 1126.068 kb on - strand, within SM_b21586at 1126.108 kb on + strand, within SM_b21586at 1126.108 kb on + strand, within SM_b21586at 1126.109 kb on - strand, within SM_b21586at 1126.313 kb on - strand, within SM_b21586at 1126.330 kb on + strand, within SM_b21586at 1126.502 kb on + strand, within SM_b21586at 1126.502 kb on + strand, within SM_b21586at 1126.503 kb on - strand, within SM_b21586at 1126.567 kb on - strand, within SM_b21586at 1126.567 kb on - strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1126.568 kb on + strand, within SM_b21586at 1127.261 kb on + strand, within SM_b21587at 1127.261 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.434 kb on + strand, within SM_b21587at 1127.435 kb on - strand, within SM_b21587at 1127.546 kb on + strand, within SM_b21587at 1127.828 kb on + strandat 1127.828 kb on + strandat 1128.020 kb on + strandat 1128.265 kb on - strand, within SM_b21588at 1128.294 kb on - strand, within SM_b21588at 1128.432 kb on + strand, within SM_b21588at 1128.432 kb on + strand, within SM_b21588at 1128.433 kb on - strand, within SM_b21588at 1128.433 kb on - strand, within SM_b21588at 1128.560 kb on - strand, within SM_b21588at 1128.621 kb on + strand, within SM_b21588

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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1,125,954 - SM_b21586 0.25 +0.2
1,125,954 - SM_b21586 0.25 -0.3
1,125,954 - SM_b21586 0.25 +0.1
1,126,016 - SM_b21586 0.30 -0.1
1,126,016 - SM_b21586 0.30 +0.4
1,126,068 - SM_b21586 0.35 +0.1
1,126,108 + SM_b21586 0.39 +0.0
1,126,108 + SM_b21586 0.39 +0.6
1,126,109 - SM_b21586 0.39 -1.5
1,126,313 - SM_b21586 0.59 +0.1
1,126,330 + SM_b21586 0.60 -0.2
1,126,502 + SM_b21586 0.77 +0.6
1,126,502 + SM_b21586 0.77 +0.2
1,126,503 - SM_b21586 0.77 +1.8
1,126,567 - SM_b21586 0.83 -0.5
1,126,567 - SM_b21586 0.83 -0.1
1,126,568 + SM_b21586 0.83 +2.5
1,126,568 + SM_b21586 0.83 -0.7
1,126,568 + SM_b21586 0.83 -0.4
1,126,568 + SM_b21586 0.83 -0.0
1,127,261 + SM_b21587 0.38 +0.1
1,127,261 + SM_b21587 0.38 -1.6
1,127,434 + SM_b21587 0.56 +0.3
1,127,434 + SM_b21587 0.56 +1.5
1,127,434 + SM_b21587 0.56 +2.4
1,127,434 + SM_b21587 0.56 +0.1
1,127,435 - SM_b21587 0.56 -0.2
1,127,546 + SM_b21587 0.68 -0.2
1,127,828 + -1.1
1,127,828 + +0.3
1,128,020 + -2.8
1,128,265 - SM_b21588 0.17 -1.8
1,128,294 - SM_b21588 0.19 -0.5
1,128,432 + SM_b21588 0.28 +0.5
1,128,432 + SM_b21588 0.28 +2.7
1,128,433 - SM_b21588 0.29 -0.4
1,128,433 - SM_b21588 0.29 +0.5
1,128,560 - SM_b21588 0.37 -0.0
1,128,621 + SM_b21588 0.41 +0.7

Or see this region's nucleotide sequence