Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21525

Experiment: Gelatin (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21385 and SM_b21525 are separated by 45 nucleotidesSM_b21525 and SM_b21526 are separated by 156 nucleotides SM_b21385: SM_b21385 - AraC family transcriptional regulator, at 1,048,341 to 1,049,276 _b21385 SM_b21525: SM_b21525 - transcriptional regulator, at 1,049,322 to 1,050,797 _b21525 SM_b21526: SM_b21526 - taurine uptake ABC transporter substrate-binding protein precursor, at 1,050,954 to 1,051,973 _b21526 Position (kb) 1049 1050 1051Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1048.371 kb on + strandat 1048.371 kb on + strandat 1048.371 kb on + strandat 1048.372 kb on - strandat 1048.372 kb on - strandat 1048.412 kb on + strandat 1048.413 kb on - strandat 1048.413 kb on - strandat 1048.463 kb on - strand, within SM_b21385at 1048.463 kb on - strand, within SM_b21385at 1048.463 kb on - strand, within SM_b21385at 1048.473 kb on + strand, within SM_b21385at 1048.519 kb on + strand, within SM_b21385at 1048.519 kb on + strand, within SM_b21385at 1048.520 kb on - strand, within SM_b21385at 1048.541 kb on - strand, within SM_b21385at 1048.541 kb on - strand, within SM_b21385at 1048.545 kb on + strand, within SM_b21385at 1048.545 kb on + strand, within SM_b21385at 1048.546 kb on - strand, within SM_b21385at 1048.623 kb on + strand, within SM_b21385at 1048.623 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.839 kb on + strand, within SM_b21385at 1048.840 kb on - strand, within SM_b21385at 1048.840 kb on - strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.945 kb on - strand, within SM_b21385at 1048.945 kb on - strand, within SM_b21385at 1049.050 kb on - strand, within SM_b21385at 1049.136 kb on + strand, within SM_b21385at 1049.167 kb on - strand, within SM_b21385at 1049.274 kb on + strandat 1049.274 kb on + strandat 1049.275 kb on - strandat 1049.275 kb on - strandat 1049.323 kb on + strandat 1049.618 kb on - strand, within SM_b21525at 1049.618 kb on - strand, within SM_b21525at 1049.618 kb on - strand, within SM_b21525at 1049.650 kb on + strand, within SM_b21525at 1049.651 kb on - strand, within SM_b21525at 1049.651 kb on - strand, within SM_b21525at 1049.767 kb on + strand, within SM_b21525at 1049.815 kb on + strand, within SM_b21525at 1049.815 kb on + strand, within SM_b21525at 1049.815 kb on + strand, within SM_b21525at 1049.907 kb on + strand, within SM_b21525at 1049.908 kb on - strand, within SM_b21525at 1050.257 kb on + strand, within SM_b21525at 1050.257 kb on + strand, within SM_b21525at 1050.258 kb on - strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.391 kb on + strand, within SM_b21525at 1050.392 kb on - strand, within SM_b21525at 1050.394 kb on - strand, within SM_b21525at 1050.394 kb on - strand, within SM_b21525at 1050.409 kb on + strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.633 kb on - strand, within SM_b21525at 1050.700 kb on - strandat 1050.700 kb on - strandat 1050.866 kb on + strandat 1050.867 kb on - strandat 1050.867 kb on - strandat 1050.867 kb on - strandat 1050.873 kb on - strandat 1050.902 kb on + strandat 1050.902 kb on + strandat 1051.134 kb on + strand, within SM_b21526at 1051.136 kb on + strand, within SM_b21526at 1051.136 kb on + strand, within SM_b21526at 1051.207 kb on + strand, within SM_b21526at 1051.207 kb on + strand, within SM_b21526at 1051.208 kb on - strand, within SM_b21526at 1051.208 kb on - strand, within SM_b21526at 1051.420 kb on + strand, within SM_b21526at 1051.512 kb on + strand, within SM_b21526at 1051.512 kb on + strand, within SM_b21526at 1051.513 kb on - strand, within SM_b21526at 1051.686 kb on + strand, within SM_b21526at 1051.686 kb on + strand, within SM_b21526at 1051.779 kb on - strand, within SM_b21526

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
remove
1,048,371 + +2.9
1,048,371 + +1.1
1,048,371 + +0.5
1,048,372 - -3.0
1,048,372 - +1.1
1,048,412 + +0.0
1,048,413 - -0.9
1,048,413 - +0.7
1,048,463 - SM_b21385 0.13 -0.8
1,048,463 - SM_b21385 0.13 +1.1
1,048,463 - SM_b21385 0.13 -0.5
1,048,473 + SM_b21385 0.14 +2.0
1,048,519 + SM_b21385 0.19 -0.8
1,048,519 + SM_b21385 0.19 -1.1
1,048,520 - SM_b21385 0.19 +0.0
1,048,541 - SM_b21385 0.21 +0.4
1,048,541 - SM_b21385 0.21 -0.9
1,048,545 + SM_b21385 0.22 +0.3
1,048,545 + SM_b21385 0.22 -1.8
1,048,546 - SM_b21385 0.22 +0.4
1,048,623 + SM_b21385 0.30 +0.1
1,048,623 + SM_b21385 0.30 +0.1
1,048,688 + SM_b21385 0.37 -0.5
1,048,688 + SM_b21385 0.37 -0.6
1,048,688 + SM_b21385 0.37 +1.5
1,048,839 + SM_b21385 0.53 +0.2
1,048,840 - SM_b21385 0.53 -0.7
1,048,840 - SM_b21385 0.53 +0.3
1,048,899 + SM_b21385 0.60 +1.5
1,048,899 + SM_b21385 0.60 +0.5
1,048,899 + SM_b21385 0.60 -0.0
1,048,899 + SM_b21385 0.60 +0.1
1,048,900 - SM_b21385 0.60 +0.7
1,048,900 - SM_b21385 0.60 -0.1
1,048,900 - SM_b21385 0.60 +0.9
1,048,945 - SM_b21385 0.65 +0.2
1,048,945 - SM_b21385 0.65 -0.3
1,049,050 - SM_b21385 0.76 +0.4
1,049,136 + SM_b21385 0.85 +0.2
1,049,167 - SM_b21385 0.88 +2.0
1,049,274 + -0.0
1,049,274 + -1.1
1,049,275 - +0.0
1,049,275 - -0.4
1,049,323 + +0.2
1,049,618 - SM_b21525 0.20 +1.2
1,049,618 - SM_b21525 0.20 -0.1
1,049,618 - SM_b21525 0.20 +0.6
1,049,650 + SM_b21525 0.22 +0.2
1,049,651 - SM_b21525 0.22 +0.6
1,049,651 - SM_b21525 0.22 +0.0
1,049,767 + SM_b21525 0.30 +0.0
1,049,815 + SM_b21525 0.33 +0.9
1,049,815 + SM_b21525 0.33 -0.1
1,049,815 + SM_b21525 0.33 +0.1
1,049,907 + SM_b21525 0.40 -0.1
1,049,908 - SM_b21525 0.40 -0.3
1,050,257 + SM_b21525 0.63 +0.3
1,050,257 + SM_b21525 0.63 +0.6
1,050,258 - SM_b21525 0.63 +0.1
1,050,259 + SM_b21525 0.63 -0.5
1,050,259 + SM_b21525 0.63 +3.2
1,050,259 + SM_b21525 0.63 -0.1
1,050,260 - SM_b21525 0.64 -0.4
1,050,260 - SM_b21525 0.64 +1.2
1,050,260 - SM_b21525 0.64 +0.2
1,050,260 - SM_b21525 0.64 +0.6
1,050,260 - SM_b21525 0.64 +0.6
1,050,391 + SM_b21525 0.72 +0.2
1,050,392 - SM_b21525 0.72 +0.4
1,050,394 - SM_b21525 0.73 +1.0
1,050,394 - SM_b21525 0.73 +1.5
1,050,409 + SM_b21525 0.74 +0.2
1,050,581 - SM_b21525 0.85 -1.5
1,050,581 - SM_b21525 0.85 +0.2
1,050,581 - SM_b21525 0.85 +1.3
1,050,581 - SM_b21525 0.85 -0.2
1,050,581 - SM_b21525 0.85 +0.2
1,050,633 - SM_b21525 0.89 -1.2
1,050,700 - +1.0
1,050,700 - +0.6
1,050,866 + +1.1
1,050,867 - -1.6
1,050,867 - +0.4
1,050,867 - +0.1
1,050,873 - +1.1
1,050,902 + -0.4
1,050,902 + -0.1
1,051,134 + SM_b21526 0.18 +4.2
1,051,136 + SM_b21526 0.18 +0.3
1,051,136 + SM_b21526 0.18 +0.7
1,051,207 + SM_b21526 0.25 -1.9
1,051,207 + SM_b21526 0.25 -0.6
1,051,208 - SM_b21526 0.25 -3.7
1,051,208 - SM_b21526 0.25 +1.3
1,051,420 + SM_b21526 0.46 -1.3
1,051,512 + SM_b21526 0.55 -1.6
1,051,512 + SM_b21526 0.55 -1.7
1,051,513 - SM_b21526 0.55 +0.5
1,051,686 + SM_b21526 0.72 -0.8
1,051,686 + SM_b21526 0.72 +0.8
1,051,779 - SM_b21526 0.81 -0.1

Or see this region's nucleotide sequence