Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21508 and SM_b21509 are separated by 173 nucleotides SM_b21509 and SM_b21510 overlap by 269 nucleotides SM_b21510 and SM_b21511 are separated by 13 nucleotides SM_b21511 and SM_b21512 are separated by 59 nucleotides
SM_b21508: SM_b21508 - dihydrodipicolinate synthetase, at 1,433,836 to 1,434,750
_b21508
SM_b21509: SM_b21509 - plasmid stability protein, at 1,434,924 to 1,435,436
_b21509
SM_b21510: SM_b21510 - plasmid stability protein, at 1,435,168 to 1,435,293
_b21510
SM_b21511: SM_b21511 - plasmid stability protein, at 1,435,307 to 1,435,552
_b21511
SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760
_b21512
Position (kb)
1435
1436 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1434.333 kb on + strand, within SM_b21508 at 1434.338 kb on + strand, within SM_b21508 at 1434.389 kb on + strand, within SM_b21508 at 1434.390 kb on - strand, within SM_b21508 at 1434.416 kb on + strand, within SM_b21508 at 1434.417 kb on - strand, within SM_b21508 at 1434.422 kb on - strand, within SM_b21508 at 1434.593 kb on + strand, within SM_b21508 at 1434.594 kb on - strand, within SM_b21508 at 1434.792 kb on - strand at 1435.126 kb on + strand, within SM_b21509 at 1435.230 kb on - strand at 1435.265 kb on + strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.301 kb on + strand, within SM_b21509 at 1435.390 kb on + strand at 1435.391 kb on - strand at 1435.391 kb on - strand at 1435.395 kb on + strand at 1435.396 kb on - strand at 1435.396 kb on - strand at 1435.434 kb on + strand at 1435.526 kb on + strand, within SM_b21511 at 1435.561 kb on + strand at 1435.561 kb on + strand at 1435.562 kb on - strand at 1435.565 kb on + strand at 1435.565 kb on + strand at 1435.566 kb on - strand at 1435.566 kb on - strand at 1435.602 kb on + strand at 1435.602 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.725 kb on - strand at 1435.764 kb on + strand, within SM_b21512 at 1435.764 kb on + strand, within SM_b21512 at 1435.765 kb on - strand, within SM_b21512 at 1435.808 kb on + strand at 1436.419 kb on - strand, within SM_b21512 at 1436.419 kb on - strand, within SM_b21512 at 1436.498 kb on - strand, within SM_b21512 at 1436.498 kb on - strand, within SM_b21512 at 1436.509 kb on + strand, within SM_b21512
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 1,434,333 + SM_b21508 0.54 +0.8 1,434,338 + SM_b21508 0.55 -0.4 1,434,389 + SM_b21508 0.60 +1.8 1,434,390 - SM_b21508 0.61 +0.4 1,434,416 + SM_b21508 0.63 +0.0 1,434,417 - SM_b21508 0.63 +0.9 1,434,422 - SM_b21508 0.64 +0.8 1,434,593 + SM_b21508 0.83 +1.1 1,434,594 - SM_b21508 0.83 -0.6 1,434,792 - +0.8 1,435,126 + SM_b21509 0.39 -1.9 1,435,230 - -0.8 1,435,265 + +1.2 1,435,266 - -1.0 1,435,266 - -2.6 1,435,266 - +0.6 1,435,301 + SM_b21509 0.73 -0.4 1,435,390 + +0.5 1,435,391 - +0.7 1,435,391 - +0.1 1,435,395 + +1.2 1,435,396 - -0.7 1,435,396 - -4.0 1,435,434 + +0.9 1,435,526 + SM_b21511 0.89 +0.4 1,435,561 + +0.2 1,435,561 + +0.6 1,435,562 - +1.1 1,435,565 + +0.9 1,435,565 + +1.2 1,435,566 - -0.7 1,435,566 - +0.1 1,435,602 + +0.0 1,435,602 + -1.4 1,435,664 + -2.0 1,435,664 + -2.6 1,435,664 + -2.3 1,435,664 + +0.3 1,435,665 - -0.6 1,435,665 - +0.2 1,435,665 - -0.0 1,435,665 - -3.5 1,435,725 - +0.2 1,435,764 + SM_b21512 0.13 +0.4 1,435,764 + SM_b21512 0.13 -2.8 1,435,765 - SM_b21512 0.13 +2.1 1,435,808 + +2.7 1,436,419 - SM_b21512 0.70 +0.8 1,436,419 - SM_b21512 0.70 -0.1 1,436,498 - SM_b21512 0.77 +0.8 1,436,498 - SM_b21512 0.77 -0.2 1,436,509 + SM_b21512 0.78 -1.7
Or see this region's nucleotide sequence