Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21292

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21291 and SM_b21292 are separated by 149 nucleotidesSM_b21292 and SM_b21293 overlap by 4 nucleotides SM_b21291: SM_b21291 - LysR family transcriptional regulator, at 867,060 to 868,007 _b21291 SM_b21292: SM_b21292 - membrane protein, at 868,157 to 869,395 _b21292 SM_b21293: SM_b21293 - guanine deaminase, at 869,392 to 870,735 _b21293 Position (kb) 868 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 867.257 kb on + strand, within SM_b21291at 867.258 kb on - strand, within SM_b21291at 867.400 kb on + strand, within SM_b21291at 867.400 kb on + strand, within SM_b21291at 867.400 kb on + strand, within SM_b21291at 867.401 kb on - strand, within SM_b21291at 867.403 kb on + strand, within SM_b21291at 867.421 kb on + strand, within SM_b21291at 867.568 kb on - strand, within SM_b21291at 867.617 kb on + strand, within SM_b21291at 867.618 kb on - strand, within SM_b21291at 867.618 kb on - strand, within SM_b21291at 867.675 kb on + strand, within SM_b21291at 867.812 kb on - strand, within SM_b21291at 867.878 kb on + strand, within SM_b21291at 868.038 kb on + strandat 868.126 kb on + strandat 868.126 kb on + strandat 868.127 kb on - strandat 868.160 kb on + strandat 868.160 kb on + strandat 868.160 kb on + strandat 868.161 kb on - strandat 868.161 kb on - strandat 868.161 kb on - strandat 868.343 kb on + strand, within SM_b21292at 868.343 kb on + strand, within SM_b21292at 868.343 kb on + strand, within SM_b21292at 868.343 kb on + strand, within SM_b21292at 868.344 kb on - strand, within SM_b21292at 868.344 kb on - strand, within SM_b21292at 868.344 kb on - strand, within SM_b21292at 868.415 kb on + strand, within SM_b21292at 868.458 kb on - strand, within SM_b21292at 868.458 kb on - strand, within SM_b21292at 868.478 kb on + strand, within SM_b21292at 868.478 kb on + strand, within SM_b21292at 868.479 kb on - strand, within SM_b21292at 868.603 kb on + strand, within SM_b21292at 868.625 kb on + strand, within SM_b21292at 868.626 kb on - strand, within SM_b21292at 868.626 kb on - strand, within SM_b21292at 868.685 kb on + strand, within SM_b21292at 868.845 kb on - strand, within SM_b21292at 868.910 kb on + strand, within SM_b21292at 868.911 kb on - strand, within SM_b21292at 868.911 kb on - strand, within SM_b21292at 868.912 kb on + strand, within SM_b21292at 868.913 kb on - strand, within SM_b21292at 869.468 kb on - strandat 869.531 kb on - strand, within SM_b21293at 869.559 kb on + strand, within SM_b21293at 869.559 kb on + strand, within SM_b21293at 869.594 kb on + strand, within SM_b21293at 869.614 kb on - strand, within SM_b21293at 869.614 kb on - strand, within SM_b21293at 869.653 kb on + strand, within SM_b21293at 869.653 kb on + strand, within SM_b21293at 869.653 kb on + strand, within SM_b21293at 869.687 kb on - strand, within SM_b21293at 869.687 kb on - strand, within SM_b21293at 869.687 kb on - strand, within SM_b21293at 869.687 kb on - strand, within SM_b21293at 869.794 kb on + strand, within SM_b21293at 869.929 kb on + strand, within SM_b21293at 869.950 kb on - strand, within SM_b21293at 869.984 kb on - strand, within SM_b21293at 869.984 kb on - strand, within SM_b21293at 870.070 kb on + strand, within SM_b21293at 870.070 kb on + strand, within SM_b21293at 870.071 kb on - strand, within SM_b21293at 870.145 kb on + strand, within SM_b21293at 870.146 kb on - strand, within SM_b21293at 870.157 kb on + strand, within SM_b21293at 870.157 kb on + strand, within SM_b21293at 870.158 kb on - strand, within SM_b21293at 870.158 kb on - strand, within SM_b21293at 870.158 kb on - strand, within SM_b21293at 870.158 kb on - strand, within SM_b21293at 870.167 kb on - strand, within SM_b21293at 870.227 kb on + strand, within SM_b21293at 870.228 kb on - strand, within SM_b21293at 870.383 kb on + strand, within SM_b21293at 870.384 kb on - strand, within SM_b21293

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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867,257 + SM_b21291 0.21 -0.5
867,258 - SM_b21291 0.21 -0.3
867,400 + SM_b21291 0.36 -0.6
867,400 + SM_b21291 0.36 -0.8
867,400 + SM_b21291 0.36 +1.9
867,401 - SM_b21291 0.36 +1.2
867,403 + SM_b21291 0.36 +0.5
867,421 + SM_b21291 0.38 +0.0
867,568 - SM_b21291 0.54 +1.0
867,617 + SM_b21291 0.59 -0.6
867,618 - SM_b21291 0.59 -0.6
867,618 - SM_b21291 0.59 -1.1
867,675 + SM_b21291 0.65 -0.3
867,812 - SM_b21291 0.79 -0.1
867,878 + SM_b21291 0.86 -1.2
868,038 + -1.1
868,126 + -1.6
868,126 + +0.4
868,127 - -0.6
868,160 + +0.1
868,160 + +0.4
868,160 + +0.4
868,161 - +0.2
868,161 - +1.2
868,161 - +1.0
868,343 + SM_b21292 0.15 +0.2
868,343 + SM_b21292 0.15 -1.0
868,343 + SM_b21292 0.15 +0.8
868,343 + SM_b21292 0.15 -0.7
868,344 - SM_b21292 0.15 +0.1
868,344 - SM_b21292 0.15 +0.3
868,344 - SM_b21292 0.15 +0.8
868,415 + SM_b21292 0.21 +0.0
868,458 - SM_b21292 0.24 +0.7
868,458 - SM_b21292 0.24 +0.3
868,478 + SM_b21292 0.26 +0.0
868,478 + SM_b21292 0.26 +1.3
868,479 - SM_b21292 0.26 +0.8
868,603 + SM_b21292 0.36 +0.2
868,625 + SM_b21292 0.38 +0.6
868,626 - SM_b21292 0.38 -1.2
868,626 - SM_b21292 0.38 +0.4
868,685 + SM_b21292 0.43 -1.9
868,845 - SM_b21292 0.56 -0.2
868,910 + SM_b21292 0.61 +0.3
868,911 - SM_b21292 0.61 -2.7
868,911 - SM_b21292 0.61 -1.2
868,912 + SM_b21292 0.61 +0.6
868,913 - SM_b21292 0.61 +1.4
869,468 - -0.6
869,531 - SM_b21293 0.10 -0.7
869,559 + SM_b21293 0.12 +1.2
869,559 + SM_b21293 0.12 +0.4
869,594 + SM_b21293 0.15 -0.6
869,614 - SM_b21293 0.17 -0.5
869,614 - SM_b21293 0.17 +1.4
869,653 + SM_b21293 0.19 -1.0
869,653 + SM_b21293 0.19 -0.6
869,653 + SM_b21293 0.19 -0.3
869,687 - SM_b21293 0.22 +0.4
869,687 - SM_b21293 0.22 +0.2
869,687 - SM_b21293 0.22 +0.2
869,687 - SM_b21293 0.22 -0.1
869,794 + SM_b21293 0.30 -0.3
869,929 + SM_b21293 0.40 +0.3
869,950 - SM_b21293 0.42 +0.3
869,984 - SM_b21293 0.44 +0.2
869,984 - SM_b21293 0.44 -0.1
870,070 + SM_b21293 0.50 +0.6
870,070 + SM_b21293 0.50 +0.7
870,071 - SM_b21293 0.51 -1.2
870,145 + SM_b21293 0.56 +0.1
870,146 - SM_b21293 0.56 -0.5
870,157 + SM_b21293 0.57 -1.3
870,157 + SM_b21293 0.57 +0.7
870,158 - SM_b21293 0.57 -1.1
870,158 - SM_b21293 0.57 -3.3
870,158 - SM_b21293 0.57 +0.2
870,158 - SM_b21293 0.57 -0.8
870,167 - SM_b21293 0.58 -1.6
870,227 + SM_b21293 0.62 +0.3
870,228 - SM_b21293 0.62 -0.6
870,383 + SM_b21293 0.74 +1.1
870,384 - SM_b21293 0.74 +0.5

Or see this region's nucleotide sequence