Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21221

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21220 and SM_b21221 are separated by 242 nucleotidesSM_b21221 and SM_b21222 are separated by 224 nucleotides SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 (from data), at 782,613 to 783,494 _b21220 SM_b21221: SM_b21221 - ABC transporter for D-Glucosamine, periplasmic substrate-binding protein (from data), at 783,737 to 784,975 _b21221 SM_b21222: SM_b21222 - transcriptional regulator, at 785,200 to 786,429 _b21222 Position (kb) 783 784 785Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 782.831 kb on + strand, within SM_b21220at 782.831 kb on + strand, within SM_b21220at 782.832 kb on - strand, within SM_b21220at 782.832 kb on - strand, within SM_b21220at 782.869 kb on + strand, within SM_b21220at 782.870 kb on - strand, within SM_b21220at 783.058 kb on + strand, within SM_b21220at 783.059 kb on - strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.119 kb on - strand, within SM_b21220at 783.119 kb on - strand, within SM_b21220at 783.119 kb on - strand, within SM_b21220at 783.331 kb on + strand, within SM_b21220at 783.332 kb on - strand, within SM_b21220at 783.332 kb on - strand, within SM_b21220at 783.529 kb on + strandat 783.530 kb on - strandat 783.843 kb on + strandat 783.867 kb on + strand, within SM_b21221at 783.867 kb on + strand, within SM_b21221at 783.867 kb on + strand, within SM_b21221at 783.940 kb on - strand, within SM_b21221at 784.003 kb on + strand, within SM_b21221at 784.003 kb on + strand, within SM_b21221at 784.014 kb on + strand, within SM_b21221at 784.015 kb on - strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.179 kb on + strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.229 kb on + strand, within SM_b21221at 784.229 kb on + strand, within SM_b21221at 784.229 kb on + strand, within SM_b21221at 784.230 kb on - strand, within SM_b21221at 784.268 kb on - strand, within SM_b21221at 784.281 kb on + strand, within SM_b21221at 784.282 kb on - strand, within SM_b21221at 784.282 kb on - strand, within SM_b21221at 784.296 kb on + strand, within SM_b21221at 784.296 kb on + strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.548 kb on + strand, within SM_b21221at 784.593 kb on + strand, within SM_b21221at 784.686 kb on + strand, within SM_b21221at 784.725 kb on + strand, within SM_b21221at 784.777 kb on - strand, within SM_b21221at 784.859 kb on - strandat 784.860 kb on + strandat 784.989 kb on - strandat 784.989 kb on - strandat 785.172 kb on - strandat 785.594 kb on + strand, within SM_b21222at 785.594 kb on + strand, within SM_b21222at 785.594 kb on + strandat 785.594 kb on + strand, within SM_b21222at 785.875 kb on + strand, within SM_b21222at 785.875 kb on + strand, within SM_b21222at 785.884 kb on + strand, within SM_b21222

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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782,831 + SM_b21220 0.25 -1.8
782,831 + SM_b21220 0.25 -1.2
782,832 - SM_b21220 0.25 +0.2
782,832 - SM_b21220 0.25 +1.7
782,869 + SM_b21220 0.29 -1.2
782,870 - SM_b21220 0.29 +0.0
783,058 + SM_b21220 0.50 +0.6
783,059 - SM_b21220 0.51 +4.5
783,118 + SM_b21220 0.57 +0.2
783,118 + SM_b21220 0.57 -0.1
783,118 + SM_b21220 0.57 -0.0
783,118 + SM_b21220 0.57 +0.3
783,119 - SM_b21220 0.57 -0.0
783,119 - SM_b21220 0.57 -0.6
783,119 - SM_b21220 0.57 +0.3
783,331 + SM_b21220 0.81 -0.0
783,332 - SM_b21220 0.82 -0.7
783,332 - SM_b21220 0.82 +0.9
783,529 + -0.2
783,530 - -0.5
783,843 + -0.1
783,867 + SM_b21221 0.10 -0.1
783,867 + SM_b21221 0.10 -0.7
783,867 + SM_b21221 0.10 -0.4
783,940 - SM_b21221 0.16 -0.5
784,003 + SM_b21221 0.21 +0.5
784,003 + SM_b21221 0.21 -0.0
784,014 + SM_b21221 0.22 -0.4
784,015 - SM_b21221 0.22 -0.6
784,173 + SM_b21221 0.35 +0.5
784,173 + SM_b21221 0.35 -1.0
784,173 + SM_b21221 0.35 +0.4
784,173 + SM_b21221 0.35 -1.2
784,174 - SM_b21221 0.35 -0.3
784,174 - SM_b21221 0.35 -0.6
784,174 - SM_b21221 0.35 -0.0
784,174 - SM_b21221 0.35 -0.5
784,174 - SM_b21221 0.35 +0.9
784,179 + SM_b21221 0.36 -0.5
784,180 - SM_b21221 0.36 -0.3
784,180 - SM_b21221 0.36 -0.6
784,180 - SM_b21221 0.36 +0.2
784,180 - SM_b21221 0.36 +0.1
784,180 - SM_b21221 0.36 +3.3
784,229 + SM_b21221 0.40 +2.7
784,229 + SM_b21221 0.40 +0.2
784,229 + SM_b21221 0.40 +0.6
784,230 - SM_b21221 0.40 -0.4
784,268 - SM_b21221 0.43 -1.4
784,281 + SM_b21221 0.44 -0.7
784,282 - SM_b21221 0.44 -0.3
784,282 - SM_b21221 0.44 -0.2
784,296 + SM_b21221 0.45 +0.5
784,296 + SM_b21221 0.45 -0.7
784,297 - SM_b21221 0.45 -0.3
784,297 - SM_b21221 0.45 +0.0
784,297 - SM_b21221 0.45 -0.1
784,297 - SM_b21221 0.45 -0.0
784,297 - SM_b21221 0.45 -1.7
784,297 - SM_b21221 0.45 -0.7
784,548 + SM_b21221 0.65 -0.3
784,593 + SM_b21221 0.69 +0.1
784,686 + SM_b21221 0.77 +0.4
784,725 + SM_b21221 0.80 -1.4
784,777 - SM_b21221 0.84 -0.6
784,859 - +0.6
784,860 + -0.1
784,989 - -0.0
784,989 - +4.7
785,172 - +0.9
785,594 + SM_b21222 0.32 -1.0
785,594 + SM_b21222 0.32 -0.2
785,594 + +0.6
785,594 + SM_b21222 0.32 +0.5
785,875 + SM_b21222 0.55 -0.3
785,875 + SM_b21222 0.55 +1.2
785,884 + SM_b21222 0.56 +0.7

Or see this region's nucleotide sequence