Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21213 and SM_b21214 are separated by 128 nucleotides SM_b21214 and SM_b21215 are separated by 67 nucleotides SM_b21215 and SM_b21307 are separated by 117 nucleotides
SM_b21213: SM_b21213 - serinethreonine protein phosphatase, at 966,517 to 967,176
_b21213
SM_b21214: SM_b21214 - 2-deoxyglucose-6-phosphate phosphatase, at 967,305 to 968,027
_b21214
SM_b21215: SM_b21215 - dipeptide uptake ABC transporter substrate-binding protein precursor, at 968,095 to 969,702
_b21215
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
Position (kb) 968
969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 967.169 kb on - strand at 967.169 kb on - strand at 967.174 kb on + strand at 967.175 kb on - strand at 967.175 kb on - strand at 967.194 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.195 kb on - strand at 967.275 kb on - strand at 967.303 kb on - strand at 967.303 kb on - strand at 967.303 kb on - strand at 967.423 kb on + strand, within SM_b21214 at 967.424 kb on - strand, within SM_b21214 at 967.483 kb on + strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.731 kb on - strand, within SM_b21214 at 967.731 kb on - strand, within SM_b21214 at 967.797 kb on + strand, within SM_b21214 at 967.946 kb on + strand, within SM_b21214 at 967.946 kb on + strand, within SM_b21214 at 968.048 kb on + strand at 968.048 kb on + strand at 968.049 kb on - strand at 968.193 kb on + strand at 968.194 kb on - strand at 968.194 kb on - strand at 968.195 kb on + strand at 968.195 kb on + strand at 968.195 kb on + strand at 968.195 kb on + strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.367 kb on - strand, within SM_b21215 at 968.378 kb on + strand, within SM_b21215 at 968.411 kb on + strand, within SM_b21215 at 968.411 kb on + strand, within SM_b21215 at 968.454 kb on - strand, within SM_b21215 at 968.683 kb on - strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 969.002 kb on + strand, within SM_b21215 at 969.059 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.126 kb on - strand, within SM_b21215 at 969.369 kb on - strand, within SM_b21215 at 969.386 kb on + strand, within SM_b21215 at 969.387 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.447 kb on + strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.450 kb on - strand, within SM_b21215 at 969.524 kb on - strand, within SM_b21215 at 969.592 kb on + strand at 969.817 kb on - strand at 969.853 kb on - strand at 970.010 kb on + strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.115 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.346 kb on + strand, within SM_b21307 at 970.347 kb on - strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.541 kb on + strand, within SM_b21307 at 970.542 kb on - strand, within SM_b21307
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 967,169 - +0.0 967,169 - +0.8 967,174 + -0.2 967,175 - -1.6 967,175 - -2.2 967,194 + -2.3 967,194 + +0.4 967,195 - +0.7 967,195 - +0.1 967,275 - +0.6 967,303 - -0.2 967,303 - -2.7 967,303 - +0.1 967,423 + SM_b21214 0.16 +0.5 967,424 - SM_b21214 0.16 -0.5 967,483 + SM_b21214 0.25 -0.4 967,484 - SM_b21214 0.25 +0.1 967,484 - SM_b21214 0.25 -1.7 967,484 - SM_b21214 0.25 +0.4 967,731 - SM_b21214 0.59 +0.6 967,731 - SM_b21214 0.59 +0.9 967,797 + SM_b21214 0.68 -0.8 967,946 + SM_b21214 0.89 +1.8 967,946 + SM_b21214 0.89 +0.1 968,048 + +0.4 968,048 + +2.7 968,049 - -0.1 968,193 + -1.9 968,194 - +0.9 968,194 - -0.2 968,195 + -0.0 968,195 + -0.3 968,195 + -0.6 968,195 + -1.2 968,196 - -1.1 968,196 - +0.8 968,196 - -0.0 968,196 - -0.2 968,196 - +0.8 968,196 - -0.8 968,196 - -1.1 968,367 - SM_b21215 0.17 -0.1 968,378 + SM_b21215 0.18 +0.6 968,411 + SM_b21215 0.20 +0.2 968,411 + SM_b21215 0.20 -0.7 968,454 - SM_b21215 0.22 +0.1 968,683 - SM_b21215 0.37 +1.3 968,813 + SM_b21215 0.45 +2.2 968,813 + SM_b21215 0.45 +1.7 968,813 + SM_b21215 0.45 +0.6 968,813 + SM_b21215 0.45 +0.0 968,814 - SM_b21215 0.45 -0.2 968,814 - SM_b21215 0.45 +0.3 968,814 - SM_b21215 0.45 -0.4 968,814 - SM_b21215 0.45 -1.0 968,814 - SM_b21215 0.45 +0.7 969,002 + SM_b21215 0.56 -1.6 969,059 + SM_b21215 0.60 +0.8 969,117 + SM_b21215 0.64 +0.9 969,117 + SM_b21215 0.64 -0.0 969,118 - SM_b21215 0.64 -0.3 969,118 - SM_b21215 0.64 -0.1 969,118 - SM_b21215 0.64 +2.2 969,118 - SM_b21215 0.64 +0.3 969,126 - SM_b21215 0.64 +0.8 969,369 - SM_b21215 0.79 +1.0 969,386 + SM_b21215 0.80 +0.4 969,387 - SM_b21215 0.80 +1.0 969,410 - SM_b21215 0.82 -0.0 969,410 - SM_b21215 0.82 +3.0 969,447 + SM_b21215 0.84 -0.6 969,448 - SM_b21215 0.84 -0.2 969,448 - SM_b21215 0.84 -3.0 969,448 - SM_b21215 0.84 -0.1 969,450 - SM_b21215 0.84 +0.7 969,524 - SM_b21215 0.89 +0.4 969,592 + +0.2 969,817 - -0.6 969,853 - +1.4 970,010 + SM_b21307 0.19 -0.1 970,011 - SM_b21307 0.20 -0.1 970,011 - SM_b21307 0.20 +0.4 970,115 + SM_b21307 0.30 -0.2 970,254 + SM_b21307 0.44 +1.6 970,254 + SM_b21307 0.44 -1.3 970,254 + SM_b21307 0.44 -0.3 970,254 + SM_b21307 0.44 -0.8 970,254 + SM_b21307 0.44 +0.4 970,254 + SM_b21307 0.44 -0.1 970,254 + SM_b21307 0.44 +0.0 970,255 - SM_b21307 0.44 +0.3 970,255 - SM_b21307 0.44 +0.5 970,255 - SM_b21307 0.44 -0.1 970,255 - SM_b21307 0.44 -0.5 970,338 - SM_b21307 0.53 +1.3 970,338 - SM_b21307 0.53 -1.4 970,346 + SM_b21307 0.54 +0.1 970,347 - SM_b21307 0.54 +0.6 970,435 + SM_b21307 0.63 +1.1 970,435 + SM_b21307 0.63 +0.2 970,541 + SM_b21307 0.74 -0.1 970,542 - SM_b21307 0.74 -0.8
Or see this region's nucleotide sequence