Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20724 and SM_b20725 overlap by 4 nucleotides SM_b20725 and SM_b20726 are separated by 119 nucleotides SM_b20726 and SM_b20727 are separated by 74 nucleotides SM_b20727 and SM_b20728 are separated by 82 nucleotides SM_b20728 and SM_b20729 are separated by 108 nucleotides
SM_b20724: SM_b20724 - hypothetical protein, at 1,529,225 to 1,530,169
_b20724
SM_b20725: SM_b20725 - hypothetical protein, at 1,530,166 to 1,530,657
_b20725
SM_b20726: SM_b20726 - hypothetical protein, at 1,530,777 to 1,532,294
_b20726
SM_b20727: SM_b20727 - hypothetical protein, at 1,532,369 to 1,532,602
_b20727
SM_b20728: SM_b20728 - hypothetical protein, at 1,532,685 to 1,532,894
_b20728
SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416
_b20729
Position (kb)
1530
1531
1532
1533 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1530.080 kb on + strand at 1530.328 kb on + strand, within SM_b20725 at 1530.546 kb on - strand, within SM_b20725 at 1530.706 kb on + strand at 1530.707 kb on - strand at 1530.711 kb on + strand at 1530.712 kb on - strand at 1530.712 kb on - strand at 1530.738 kb on - strand at 1530.749 kb on - strand at 1530.761 kb on + strand at 1530.762 kb on - strand at 1530.782 kb on + strand at 1530.783 kb on - strand at 1530.841 kb on - strand at 1530.933 kb on + strand, within SM_b20726 at 1530.934 kb on - strand, within SM_b20726 at 1530.934 kb on - strand, within SM_b20726 at 1530.934 kb on - strand, within SM_b20726 at 1530.978 kb on + strand, within SM_b20726 at 1530.978 kb on + strand, within SM_b20726 at 1530.979 kb on - strand, within SM_b20726 at 1530.979 kb on - strand, within SM_b20726 at 1530.979 kb on - strand, within SM_b20726 at 1530.993 kb on + strand, within SM_b20726 at 1530.993 kb on + strand, within SM_b20726 at 1530.994 kb on - strand, within SM_b20726 at 1530.994 kb on - strand, within SM_b20726 at 1531.176 kb on + strand, within SM_b20726 at 1531.176 kb on + strand, within SM_b20726 at 1531.614 kb on + strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.794 kb on + strand, within SM_b20726 at 1531.928 kb on - strand, within SM_b20726 at 1532.820 kb on - strand, within SM_b20728 at 1532.820 kb on - strand, within SM_b20728 at 1532.820 kb on - strand, within SM_b20728 at 1533.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 1,530,080 + +0.3 1,530,328 + SM_b20725 0.33 +0.0 1,530,546 - SM_b20725 0.77 -0.6 1,530,706 + +0.2 1,530,707 - -0.2 1,530,711 + +0.6 1,530,712 - +0.1 1,530,712 - +0.4 1,530,738 - -0.1 1,530,749 - -0.3 1,530,761 + +0.1 1,530,762 - -1.3 1,530,782 + +0.6 1,530,783 - +0.6 1,530,841 - +0.5 1,530,933 + SM_b20726 0.10 -0.3 1,530,934 - SM_b20726 0.10 +1.2 1,530,934 - SM_b20726 0.10 -0.3 1,530,934 - SM_b20726 0.10 -0.5 1,530,978 + SM_b20726 0.13 -1.3 1,530,978 + SM_b20726 0.13 -0.2 1,530,979 - SM_b20726 0.13 -2.9 1,530,979 - SM_b20726 0.13 +2.0 1,530,979 - SM_b20726 0.13 -0.1 1,530,993 + SM_b20726 0.14 -0.1 1,530,993 + SM_b20726 0.14 +0.1 1,530,994 - SM_b20726 0.14 +0.9 1,530,994 - SM_b20726 0.14 +0.1 1,531,176 + SM_b20726 0.26 -1.5 1,531,176 + SM_b20726 0.26 +0.5 1,531,614 + SM_b20726 0.55 -1.2 1,531,615 - SM_b20726 0.55 +0.6 1,531,615 - SM_b20726 0.55 -0.6 1,531,615 - SM_b20726 0.55 -0.0 1,531,615 - SM_b20726 0.55 -0.7 1,531,615 - SM_b20726 0.55 +0.2 1,531,615 - SM_b20726 0.55 -0.2 1,531,615 - SM_b20726 0.55 -0.6 1,531,794 + SM_b20726 0.67 -0.1 1,531,928 - SM_b20726 0.76 +0.8 1,532,820 - SM_b20728 0.64 -0.8 1,532,820 - SM_b20728 0.64 -1.7 1,532,820 - SM_b20728 0.64 +0.3 1,533,042 + +0.0
Or see this region's nucleotide sequence