Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20726

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20724 and SM_b20725 overlap by 4 nucleotidesSM_b20725 and SM_b20726 are separated by 119 nucleotidesSM_b20726 and SM_b20727 are separated by 74 nucleotidesSM_b20727 and SM_b20728 are separated by 82 nucleotidesSM_b20728 and SM_b20729 are separated by 108 nucleotides SM_b20724: SM_b20724 - hypothetical protein, at 1,529,225 to 1,530,169 _b20724 SM_b20725: SM_b20725 - hypothetical protein, at 1,530,166 to 1,530,657 _b20725 SM_b20726: SM_b20726 - hypothetical protein, at 1,530,777 to 1,532,294 _b20726 SM_b20727: SM_b20727 - hypothetical protein, at 1,532,369 to 1,532,602 _b20727 SM_b20728: SM_b20728 - hypothetical protein, at 1,532,685 to 1,532,894 _b20728 SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416 _b20729 Position (kb) 1530 1531 1532 1533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1530.080 kb on + strandat 1530.328 kb on + strand, within SM_b20725at 1530.546 kb on - strand, within SM_b20725at 1530.706 kb on + strandat 1530.707 kb on - strandat 1530.711 kb on + strandat 1530.712 kb on - strandat 1530.712 kb on - strandat 1530.738 kb on - strandat 1530.749 kb on - strandat 1530.761 kb on + strandat 1530.762 kb on - strandat 1530.782 kb on + strandat 1530.783 kb on - strandat 1530.841 kb on - strandat 1530.933 kb on + strand, within SM_b20726at 1530.934 kb on - strand, within SM_b20726at 1530.934 kb on - strand, within SM_b20726at 1530.934 kb on - strand, within SM_b20726at 1530.978 kb on + strand, within SM_b20726at 1530.978 kb on + strand, within SM_b20726at 1530.979 kb on - strand, within SM_b20726at 1530.979 kb on - strand, within SM_b20726at 1530.979 kb on - strand, within SM_b20726at 1530.993 kb on + strand, within SM_b20726at 1530.993 kb on + strand, within SM_b20726at 1530.994 kb on - strand, within SM_b20726at 1530.994 kb on - strand, within SM_b20726at 1531.176 kb on + strand, within SM_b20726at 1531.176 kb on + strand, within SM_b20726at 1531.614 kb on + strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.615 kb on - strand, within SM_b20726at 1531.794 kb on + strand, within SM_b20726at 1531.928 kb on - strand, within SM_b20726at 1532.820 kb on - strand, within SM_b20728at 1532.820 kb on - strand, within SM_b20728at 1532.820 kb on - strand, within SM_b20728at 1533.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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1,530,080 + +0.3
1,530,328 + SM_b20725 0.33 +0.0
1,530,546 - SM_b20725 0.77 -0.6
1,530,706 + +0.2
1,530,707 - -0.2
1,530,711 + +0.6
1,530,712 - +0.1
1,530,712 - +0.4
1,530,738 - -0.1
1,530,749 - -0.3
1,530,761 + +0.1
1,530,762 - -1.3
1,530,782 + +0.6
1,530,783 - +0.6
1,530,841 - +0.5
1,530,933 + SM_b20726 0.10 -0.3
1,530,934 - SM_b20726 0.10 +1.2
1,530,934 - SM_b20726 0.10 -0.3
1,530,934 - SM_b20726 0.10 -0.5
1,530,978 + SM_b20726 0.13 -1.3
1,530,978 + SM_b20726 0.13 -0.2
1,530,979 - SM_b20726 0.13 -2.9
1,530,979 - SM_b20726 0.13 +2.0
1,530,979 - SM_b20726 0.13 -0.1
1,530,993 + SM_b20726 0.14 -0.1
1,530,993 + SM_b20726 0.14 +0.1
1,530,994 - SM_b20726 0.14 +0.9
1,530,994 - SM_b20726 0.14 +0.1
1,531,176 + SM_b20726 0.26 -1.5
1,531,176 + SM_b20726 0.26 +0.5
1,531,614 + SM_b20726 0.55 -1.2
1,531,615 - SM_b20726 0.55 +0.6
1,531,615 - SM_b20726 0.55 -0.6
1,531,615 - SM_b20726 0.55 -0.0
1,531,615 - SM_b20726 0.55 -0.7
1,531,615 - SM_b20726 0.55 +0.2
1,531,615 - SM_b20726 0.55 -0.2
1,531,615 - SM_b20726 0.55 -0.6
1,531,794 + SM_b20726 0.67 -0.1
1,531,928 - SM_b20726 0.76 +0.8
1,532,820 - SM_b20728 0.64 -0.8
1,532,820 - SM_b20728 0.64 -1.7
1,532,820 - SM_b20728 0.64 +0.3
1,533,042 + +0.0

Or see this region's nucleotide sequence