Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20654 and SM_b20655 are separated by 193 nucleotides SM_b20655 and SM_b20656 are separated by 270 nucleotides SM_b20656 and SM_b20657 are separated by 38 nucleotides SM_b20657 and SM_b20658 are separated by 7 nucleotides
SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380
_b20654
SM_b20655: SM_b20655 - hypothetical protein, at 1,456,574 to 1,457,050
_b20655
SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190
_b20656
SM_b20657: SM_b20657 - hypothetical protein, at 1,458,229 to 1,458,885
_b20657
SM_b20658: SM_b20658 - sugar uptake ABC transporter permease, at 1,458,893 to 1,459,792
_b20658
Position (kb)
1457
1458
1459 Strain fitness (log2 ratio)
-1
0
1
2 at 1456.330 kb on - strand, within SM_b20654 at 1456.371 kb on + strand at 1456.372 kb on - strand at 1456.378 kb on + strand at 1456.416 kb on + strand at 1456.417 kb on - strand at 1456.417 kb on - strand at 1456.487 kb on + strand at 1456.585 kb on + strand at 1456.635 kb on - strand, within SM_b20655 at 1456.635 kb on - strand, within SM_b20655 at 1456.797 kb on - strand, within SM_b20655 at 1457.008 kb on - strand at 1457.008 kb on - strand at 1457.049 kb on - strand at 1457.054 kb on + strand at 1457.108 kb on - strand at 1457.320 kb on + strand at 1457.320 kb on + strand at 1457.321 kb on - strand at 1457.321 kb on - strand at 1457.457 kb on + strand, within SM_b20656 at 1457.667 kb on - strand, within SM_b20656 at 1457.667 kb on - strand, within SM_b20656 at 1457.771 kb on + strand, within SM_b20656 at 1457.772 kb on - strand, within SM_b20656 at 1457.861 kb on + strand, within SM_b20656 at 1457.862 kb on - strand, within SM_b20656 at 1457.862 kb on - strand, within SM_b20656 at 1457.862 kb on - strand, within SM_b20656 at 1457.867 kb on - strand, within SM_b20656 at 1457.867 kb on - strand, within SM_b20656 at 1458.105 kb on + strand at 1458.173 kb on + strand at 1458.174 kb on - strand at 1458.247 kb on + strand at 1458.466 kb on + strand, within SM_b20657 at 1458.477 kb on + strand, within SM_b20657 at 1458.477 kb on + strand, within SM_b20657 at 1458.478 kb on - strand, within SM_b20657 at 1458.927 kb on + strand at 1458.927 kb on + strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.928 kb on - strand at 1458.930 kb on + strand at 1458.931 kb on - strand at 1458.931 kb on - strand at 1458.948 kb on + strand at 1458.949 kb on - strand at 1458.949 kb on - strand at 1459.089 kb on + strand, within SM_b20658
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 1,456,330 - SM_b20654 0.87 -0.0 1,456,371 + +0.1 1,456,372 - +0.4 1,456,378 + -0.1 1,456,416 + +0.7 1,456,417 - +0.3 1,456,417 - -1.7 1,456,487 + -0.2 1,456,585 + +0.1 1,456,635 - SM_b20655 0.13 +0.7 1,456,635 - SM_b20655 0.13 +1.0 1,456,797 - SM_b20655 0.47 +0.0 1,457,008 - -0.6 1,457,008 - +0.5 1,457,049 - -0.4 1,457,054 + +0.0 1,457,108 - -0.3 1,457,320 + -0.3 1,457,320 + -0.4 1,457,321 - -0.1 1,457,321 - -0.5 1,457,457 + SM_b20656 0.16 -0.8 1,457,667 - SM_b20656 0.40 -0.2 1,457,667 - SM_b20656 0.40 -0.6 1,457,771 + SM_b20656 0.52 +1.5 1,457,772 - SM_b20656 0.52 +0.6 1,457,861 + SM_b20656 0.62 +0.4 1,457,862 - SM_b20656 0.62 -0.4 1,457,862 - SM_b20656 0.62 +0.8 1,457,862 - SM_b20656 0.62 +0.2 1,457,867 - SM_b20656 0.63 -0.5 1,457,867 - SM_b20656 0.63 -0.7 1,458,105 + +0.0 1,458,173 + -0.4 1,458,174 - +0.1 1,458,247 + +1.1 1,458,466 + SM_b20657 0.36 -0.7 1,458,477 + SM_b20657 0.38 +0.2 1,458,477 + SM_b20657 0.38 -1.4 1,458,478 - SM_b20657 0.38 +1.6 1,458,927 + +0.2 1,458,927 + -1.0 1,458,928 - +0.9 1,458,928 - -1.2 1,458,928 - -0.9 1,458,928 - -0.3 1,458,930 + +0.4 1,458,931 - +2.6 1,458,931 - +0.3 1,458,948 + +0.3 1,458,949 - -0.2 1,458,949 - +0.2 1,459,089 + SM_b20658 0.22 +0.3
Or see this region's nucleotide sequence