Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20656

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20654 and SM_b20655 are separated by 193 nucleotidesSM_b20655 and SM_b20656 are separated by 270 nucleotidesSM_b20656 and SM_b20657 are separated by 38 nucleotidesSM_b20657 and SM_b20658 are separated by 7 nucleotides SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380 _b20654 SM_b20655: SM_b20655 - hypothetical protein, at 1,456,574 to 1,457,050 _b20655 SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190 _b20656 SM_b20657: SM_b20657 - hypothetical protein, at 1,458,229 to 1,458,885 _b20657 SM_b20658: SM_b20658 - sugar uptake ABC transporter permease, at 1,458,893 to 1,459,792 _b20658 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -1 0 1 2at 1456.330 kb on - strand, within SM_b20654at 1456.371 kb on + strandat 1456.372 kb on - strandat 1456.378 kb on + strandat 1456.416 kb on + strandat 1456.417 kb on - strandat 1456.417 kb on - strandat 1456.487 kb on + strandat 1456.585 kb on + strandat 1456.635 kb on - strand, within SM_b20655at 1456.635 kb on - strand, within SM_b20655at 1456.797 kb on - strand, within SM_b20655at 1457.008 kb on - strandat 1457.008 kb on - strandat 1457.049 kb on - strandat 1457.054 kb on + strandat 1457.108 kb on - strandat 1457.320 kb on + strandat 1457.320 kb on + strandat 1457.321 kb on - strandat 1457.321 kb on - strandat 1457.457 kb on + strand, within SM_b20656at 1457.667 kb on - strand, within SM_b20656at 1457.667 kb on - strand, within SM_b20656at 1457.771 kb on + strand, within SM_b20656at 1457.772 kb on - strand, within SM_b20656at 1457.861 kb on + strand, within SM_b20656at 1457.862 kb on - strand, within SM_b20656at 1457.862 kb on - strand, within SM_b20656at 1457.862 kb on - strand, within SM_b20656at 1457.867 kb on - strand, within SM_b20656at 1457.867 kb on - strand, within SM_b20656at 1458.105 kb on + strandat 1458.173 kb on + strandat 1458.174 kb on - strandat 1458.247 kb on + strandat 1458.466 kb on + strand, within SM_b20657at 1458.477 kb on + strand, within SM_b20657at 1458.477 kb on + strand, within SM_b20657at 1458.478 kb on - strand, within SM_b20657at 1458.927 kb on + strandat 1458.927 kb on + strandat 1458.928 kb on - strandat 1458.928 kb on - strandat 1458.928 kb on - strandat 1458.928 kb on - strandat 1458.930 kb on + strandat 1458.931 kb on - strandat 1458.931 kb on - strandat 1458.948 kb on + strandat 1458.949 kb on - strandat 1458.949 kb on - strandat 1459.089 kb on + strand, within SM_b20658

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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1,456,330 - SM_b20654 0.87 -0.0
1,456,371 + +0.1
1,456,372 - +0.4
1,456,378 + -0.1
1,456,416 + +0.7
1,456,417 - +0.3
1,456,417 - -1.7
1,456,487 + -0.2
1,456,585 + +0.1
1,456,635 - SM_b20655 0.13 +0.7
1,456,635 - SM_b20655 0.13 +1.0
1,456,797 - SM_b20655 0.47 +0.0
1,457,008 - -0.6
1,457,008 - +0.5
1,457,049 - -0.4
1,457,054 + +0.0
1,457,108 - -0.3
1,457,320 + -0.3
1,457,320 + -0.4
1,457,321 - -0.1
1,457,321 - -0.5
1,457,457 + SM_b20656 0.16 -0.8
1,457,667 - SM_b20656 0.40 -0.2
1,457,667 - SM_b20656 0.40 -0.6
1,457,771 + SM_b20656 0.52 +1.5
1,457,772 - SM_b20656 0.52 +0.6
1,457,861 + SM_b20656 0.62 +0.4
1,457,862 - SM_b20656 0.62 -0.4
1,457,862 - SM_b20656 0.62 +0.8
1,457,862 - SM_b20656 0.62 +0.2
1,457,867 - SM_b20656 0.63 -0.5
1,457,867 - SM_b20656 0.63 -0.7
1,458,105 + +0.0
1,458,173 + -0.4
1,458,174 - +0.1
1,458,247 + +1.1
1,458,466 + SM_b20657 0.36 -0.7
1,458,477 + SM_b20657 0.38 +0.2
1,458,477 + SM_b20657 0.38 -1.4
1,458,478 - SM_b20657 0.38 +1.6
1,458,927 + +0.2
1,458,927 + -1.0
1,458,928 - +0.9
1,458,928 - -1.2
1,458,928 - -0.9
1,458,928 - -0.3
1,458,930 + +0.4
1,458,931 - +2.6
1,458,931 - +0.3
1,458,948 + +0.3
1,458,949 - -0.2
1,458,949 - +0.2
1,459,089 + SM_b20658 0.22 +0.3

Or see this region's nucleotide sequence