Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20592 and SM_b20593 are separated by 78 nucleotides SM_b20593 and SM_b20594 are separated by 8 nucleotides SM_b20594 and SM_b20595 are separated by 52 nucleotides SM_b20595 and SM_b20596 are separated by 14 nucleotides
SM_b20592: SM_b20592 - RNA polymerase sigma factor, at 1,606,089 to 1,606,772
_b20592
SM_b20593: SM_b20593 - hypothetical protein, at 1,606,851 to 1,607,375
_b20593
SM_b20594: SM_b20594 - amicyanin precursor protein, at 1,607,384 to 1,607,701
_b20594
SM_b20595: SM_b20595 - cell division protein FtsK, at 1,607,754 to 1,609,589
_b20595
SM_b20596: SM_b20596 - hypothetical protein, at 1,609,604 to 1,610,593
_b20596
Position (kb)
1607
1608
1609
1610 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1606.856 kb on + strand at 1606.960 kb on - strand, within SM_b20593 at 1606.960 kb on - strand, within SM_b20593 at 1607.183 kb on + strand, within SM_b20593 at 1607.184 kb on - strand, within SM_b20593 at 1607.184 kb on - strand, within SM_b20593 at 1607.208 kb on + strand, within SM_b20593 at 1607.208 kb on + strand, within SM_b20593 at 1607.413 kb on - strand at 1607.413 kb on - strand at 1607.648 kb on + strand, within SM_b20594 at 1607.648 kb on + strand, within SM_b20594 at 1607.649 kb on - strand, within SM_b20594 at 1607.649 kb on - strand, within SM_b20594 at 1607.649 kb on - strand, within SM_b20594 at 1607.650 kb on + strand, within SM_b20594 at 1607.650 kb on + strand, within SM_b20594 at 1607.650 kb on + strand, within SM_b20594 at 1607.651 kb on - strand, within SM_b20594 at 1607.660 kb on + strand, within SM_b20594 at 1607.661 kb on - strand, within SM_b20594 at 1607.803 kb on + strand at 1607.803 kb on + strand at 1607.804 kb on - strand at 1607.917 kb on + strand at 1607.917 kb on + strand at 1607.918 kb on - strand at 1607.968 kb on + strand, within SM_b20595 at 1608.450 kb on - strand, within SM_b20595 at 1608.451 kb on + strand, within SM_b20595 at 1608.784 kb on + strand, within SM_b20595 at 1608.785 kb on - strand, within SM_b20595 at 1609.300 kb on + strand, within SM_b20595 at 1609.365 kb on + strand, within SM_b20595 at 1609.365 kb on + strand, within SM_b20595 at 1610.395 kb on - strand, within SM_b20596
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 1,606,856 + +1.9 1,606,960 - SM_b20593 0.21 +0.2 1,606,960 - SM_b20593 0.21 -0.4 1,607,183 + SM_b20593 0.63 -2.3 1,607,184 - SM_b20593 0.63 -0.0 1,607,184 - SM_b20593 0.63 +0.1 1,607,208 + SM_b20593 0.68 +0.1 1,607,208 + SM_b20593 0.68 +0.0 1,607,413 - +0.1 1,607,413 - -0.2 1,607,648 + SM_b20594 0.83 -1.2 1,607,648 + SM_b20594 0.83 +0.4 1,607,649 - SM_b20594 0.83 -1.0 1,607,649 - SM_b20594 0.83 -0.1 1,607,649 - SM_b20594 0.83 -0.4 1,607,650 + SM_b20594 0.84 -0.1 1,607,650 + SM_b20594 0.84 -0.3 1,607,650 + SM_b20594 0.84 +0.2 1,607,651 - SM_b20594 0.84 -1.1 1,607,660 + SM_b20594 0.87 +0.9 1,607,661 - SM_b20594 0.87 -0.3 1,607,803 + -0.4 1,607,803 + -0.2 1,607,804 - +0.5 1,607,917 + -0.6 1,607,917 + -2.1 1,607,918 - +0.0 1,607,968 + SM_b20595 0.12 -2.1 1,608,450 - SM_b20595 0.38 -0.9 1,608,451 + SM_b20595 0.38 -0.7 1,608,784 + SM_b20595 0.56 -2.0 1,608,785 - SM_b20595 0.56 -2.9 1,609,300 + SM_b20595 0.84 -0.8 1,609,365 + SM_b20595 0.88 -0.9 1,609,365 + SM_b20595 0.88 -0.5 1,610,395 - SM_b20596 0.80 -2.7
Or see this region's nucleotide sequence