Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20335

Experiment: Gelatin (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20334 and SM_b20335 are separated by 220 nucleotidesSM_b20335 and SM_b20336 are separated by 49 nucleotidesSM_b20336 and SM_b20337 are separated by 57 nucleotides SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376 _b20334 SM_b20335: SM_b20335 - hypothetical protein, at 340,597 to 341,877 _b20335 SM_b20336: SM_b20336 - hypothetical protein, at 341,927 to 342,718 _b20336 SM_b20337: SM_b20337 - transcriptional regulator, at 342,776 to 343,387 _b20337 Position (kb) 340 341 342Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 339.683 kb on - strand, within SM_b20334at 339.737 kb on + strand, within SM_b20334at 339.737 kb on + strand, within SM_b20334at 339.738 kb on - strand, within SM_b20334at 339.738 kb on - strand, within SM_b20334at 339.739 kb on + strand, within SM_b20334at 339.739 kb on + strand, within SM_b20334at 339.740 kb on - strand, within SM_b20334at 339.740 kb on - strand, within SM_b20334at 339.755 kb on - strand, within SM_b20334at 339.843 kb on + strand, within SM_b20334at 339.844 kb on - strand, within SM_b20334at 339.862 kb on - strand, within SM_b20334at 339.862 kb on - strand, within SM_b20334at 339.989 kb on + strand, within SM_b20334at 339.989 kb on + strand, within SM_b20334at 339.989 kb on + strand, within SM_b20334at 340.022 kb on + strand, within SM_b20334at 340.023 kb on - strand, within SM_b20334at 340.023 kb on - strand, within SM_b20334at 340.086 kb on + strand, within SM_b20334at 340.087 kb on - strand, within SM_b20334at 340.126 kb on - strand, within SM_b20334at 340.281 kb on + strand, within SM_b20334at 340.282 kb on - strand, within SM_b20334at 340.282 kb on - strand, within SM_b20334at 340.282 kb on - strand, within SM_b20334at 340.375 kb on - strandat 340.405 kb on - strandat 340.459 kb on + strandat 340.460 kb on - strandat 340.460 kb on - strandat 340.475 kb on + strandat 340.619 kb on + strandat 340.620 kb on - strandat 340.646 kb on + strandat 340.652 kb on - strandat 341.065 kb on + strand, within SM_b20335at 341.065 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.127 kb on + strand, within SM_b20335at 341.128 kb on - strand, within SM_b20335at 341.128 kb on - strand, within SM_b20335at 341.128 kb on - strand, within SM_b20335at 341.128 kb on - strand, within SM_b20335at 341.128 kb on - strand, within SM_b20335at 341.169 kb on + strand, within SM_b20335at 341.169 kb on + strand, within SM_b20335at 341.170 kb on - strand, within SM_b20335at 341.173 kb on + strand, within SM_b20335at 341.173 kb on + strand, within SM_b20335at 341.173 kb on + strand, within SM_b20335at 341.173 kb on + strand, within SM_b20335at 341.195 kb on - strand, within SM_b20335at 341.277 kb on + strand, within SM_b20335at 341.536 kb on + strand, within SM_b20335at 341.549 kb on + strand, within SM_b20335at 341.648 kb on + strand, within SM_b20335at 341.649 kb on - strand, within SM_b20335at 341.790 kb on - strandat 341.875 kb on + strandat 341.911 kb on - strandat 341.924 kb on - strandat 342.003 kb on + strandat 342.003 kb on + strandat 342.004 kb on - strandat 342.005 kb on + strandat 342.212 kb on + strand, within SM_b20336at 342.213 kb on - strand, within SM_b20336at 342.235 kb on - strand, within SM_b20336at 342.235 kb on - strand, within SM_b20336at 342.235 kb on - strand, within SM_b20336at 342.235 kb on - strand, within SM_b20336at 342.236 kb on + strand, within SM_b20336at 342.236 kb on + strand, within SM_b20336at 342.236 kb on + strand, within SM_b20336at 342.236 kb on + strand, within SM_b20336at 342.236 kb on + strand, within SM_b20336at 342.237 kb on - strand, within SM_b20336at 342.237 kb on - strand, within SM_b20336at 342.237 kb on - strand, within SM_b20336at 342.237 kb on - strand, within SM_b20336at 342.237 kb on - strand, within SM_b20336at 342.344 kb on + strand, within SM_b20336at 342.345 kb on - strandat 342.345 kb on - strand, within SM_b20336at 342.436 kb on + strand, within SM_b20336at 342.497 kb on + strand, within SM_b20336at 342.497 kb on + strand, within SM_b20336at 342.518 kb on + strand, within SM_b20336at 342.716 kb on + strandat 342.716 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
remove
339,683 - SM_b20334 0.24 -0.6
339,737 + SM_b20334 0.30 +0.5
339,737 + SM_b20334 0.30 +0.8
339,738 - SM_b20334 0.30 -0.2
339,738 - SM_b20334 0.30 -0.1
339,739 + SM_b20334 0.30 +1.0
339,739 + SM_b20334 0.30 +0.8
339,740 - SM_b20334 0.30 +0.4
339,740 - SM_b20334 0.30 +0.5
339,755 - SM_b20334 0.32 +1.3
339,843 + SM_b20334 0.41 -0.2
339,844 - SM_b20334 0.42 +0.3
339,862 - SM_b20334 0.44 -1.1
339,862 - SM_b20334 0.44 -0.3
339,989 + SM_b20334 0.57 -0.8
339,989 + SM_b20334 0.57 +0.7
339,989 + SM_b20334 0.57 -0.3
340,022 + SM_b20334 0.61 +1.2
340,023 - SM_b20334 0.61 +0.4
340,023 - SM_b20334 0.61 -0.4
340,086 + SM_b20334 0.68 +0.3
340,087 - SM_b20334 0.68 -0.3
340,126 - SM_b20334 0.72 -0.6
340,281 + SM_b20334 0.89 +0.6
340,282 - SM_b20334 0.90 -0.5
340,282 - SM_b20334 0.90 -0.9
340,282 - SM_b20334 0.90 +0.1
340,375 - -0.3
340,405 - -0.3
340,459 + -0.8
340,460 - -0.2
340,460 - -0.6
340,475 + +0.3
340,619 + +4.4
340,620 - -0.7
340,646 + +1.2
340,652 - -1.8
341,065 + SM_b20335 0.37 -0.4
341,065 + SM_b20335 0.37 -0.5
341,127 + SM_b20335 0.41 -1.2
341,127 + SM_b20335 0.41 +1.4
341,127 + SM_b20335 0.41 -0.7
341,127 + SM_b20335 0.41 -1.9
341,127 + SM_b20335 0.41 -0.9
341,127 + SM_b20335 0.41 -1.0
341,127 + SM_b20335 0.41 -2.4
341,128 - SM_b20335 0.41 +1.1
341,128 - SM_b20335 0.41 -0.4
341,128 - SM_b20335 0.41 +2.3
341,128 - SM_b20335 0.41 +0.3
341,128 - SM_b20335 0.41 +0.3
341,169 + SM_b20335 0.45 +0.3
341,169 + SM_b20335 0.45 -1.6
341,170 - SM_b20335 0.45 +1.6
341,173 + SM_b20335 0.45 +0.4
341,173 + SM_b20335 0.45 +0.1
341,173 + SM_b20335 0.45 +0.1
341,173 + SM_b20335 0.45 -0.4
341,195 - SM_b20335 0.47 +0.2
341,277 + SM_b20335 0.53 -0.6
341,536 + SM_b20335 0.73 -0.4
341,549 + SM_b20335 0.74 +0.5
341,648 + SM_b20335 0.82 +0.1
341,649 - SM_b20335 0.82 +0.8
341,790 - -1.5
341,875 + -0.7
341,911 - -3.0
341,924 - +0.1
342,003 + -0.4
342,003 + +0.4
342,004 - -0.6
342,005 + -0.1
342,212 + SM_b20336 0.36 -0.3
342,213 - SM_b20336 0.36 -0.7
342,235 - SM_b20336 0.39 +0.6
342,235 - SM_b20336 0.39 +0.4
342,235 - SM_b20336 0.39 -0.3
342,235 - SM_b20336 0.39 +0.4
342,236 + SM_b20336 0.39 -3.2
342,236 + SM_b20336 0.39 +0.6
342,236 + SM_b20336 0.39 +0.9
342,236 + SM_b20336 0.39 -0.2
342,236 + SM_b20336 0.39 -0.2
342,237 - SM_b20336 0.39 -0.9
342,237 - SM_b20336 0.39 -2.3
342,237 - SM_b20336 0.39 +1.5
342,237 - SM_b20336 0.39 +0.4
342,237 - SM_b20336 0.39 -0.7
342,344 + SM_b20336 0.53 +0.2
342,345 - +2.8
342,345 - SM_b20336 0.53 -2.0
342,436 + SM_b20336 0.64 -0.1
342,497 + SM_b20336 0.72 -0.3
342,497 + SM_b20336 0.72 -0.6
342,518 + SM_b20336 0.75 +0.1
342,716 + -0.3
342,716 + +0.3

Or see this region's nucleotide sequence