Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20284

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20283 and SM_b20284 are separated by 84 nucleotidesSM_b20284 and SM_b20285 are separated by 79 nucleotides SM_b20283: SM_b20283 - spermidine/putrescine ABC transporter permease, at 287,493 to 288,476 _b20283 SM_b20284: SM_b20284 - spermidine/putrescine ABC transporter substrate-binding protein, at 288,561 to 289,661 _b20284 SM_b20285: SM_b20285 - transcriptional regulator, at 289,741 to 290,718 _b20285 Position (kb) 288 289 290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 287.704 kb on + strand, within SM_b20283at 287.704 kb on + strand, within SM_b20283at 287.704 kb on + strand, within SM_b20283at 287.705 kb on - strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.839 kb on + strand, within SM_b20283at 287.840 kb on - strand, within SM_b20283at 287.857 kb on + strand, within SM_b20283at 287.857 kb on + strand, within SM_b20283at 287.858 kb on - strand, within SM_b20283at 287.858 kb on - strand, within SM_b20283at 287.872 kb on + strand, within SM_b20283at 287.872 kb on + strand, within SM_b20283at 287.872 kb on + strand, within SM_b20283at 287.873 kb on - strand, within SM_b20283at 287.873 kb on - strand, within SM_b20283at 287.931 kb on - strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.086 kb on - strand, within SM_b20283at 288.086 kb on - strand, within SM_b20283at 288.241 kb on + strand, within SM_b20283at 288.380 kb on - strandat 288.418 kb on + strandat 288.467 kb on + strandat 288.776 kb on + strand, within SM_b20284at 288.791 kb on + strand, within SM_b20284at 288.791 kb on + strand, within SM_b20284at 288.791 kb on + strand, within SM_b20284at 288.792 kb on - strand, within SM_b20284at 288.793 kb on + strand, within SM_b20284at 288.794 kb on - strand, within SM_b20284at 288.839 kb on - strand, within SM_b20284at 288.839 kb on - strand, within SM_b20284at 288.851 kb on - strand, within SM_b20284at 288.851 kb on - strand, within SM_b20284at 288.851 kb on - strand, within SM_b20284at 288.874 kb on - strand, within SM_b20284at 288.874 kb on - strand, within SM_b20284at 288.926 kb on + strand, within SM_b20284at 288.937 kb on + strand, within SM_b20284at 288.937 kb on + strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.986 kb on - strand, within SM_b20284at 288.986 kb on - strand, within SM_b20284at 288.988 kb on + strand, within SM_b20284at 288.989 kb on - strand, within SM_b20284at 289.022 kb on - strand, within SM_b20284at 289.022 kb on - strand, within SM_b20284at 289.072 kb on + strand, within SM_b20284at 289.073 kb on - strand, within SM_b20284at 289.138 kb on + strand, within SM_b20284at 289.139 kb on - strand, within SM_b20284at 289.139 kb on - strand, within SM_b20284at 289.139 kb on - strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.199 kb on + strand, within SM_b20284at 289.199 kb on + strand, within SM_b20284at 289.200 kb on - strand, within SM_b20284at 289.201 kb on + strand, within SM_b20284at 289.252 kb on + strand, within SM_b20284at 289.291 kb on + strand, within SM_b20284at 289.292 kb on - strand, within SM_b20284at 289.439 kb on - strand, within SM_b20284at 289.487 kb on + strand, within SM_b20284at 289.509 kb on - strand, within SM_b20284at 289.534 kb on + strand, within SM_b20284at 289.534 kb on + strand, within SM_b20284at 289.534 kb on + strand, within SM_b20284at 289.534 kb on + strand, within SM_b20284at 289.683 kb on + strandat 289.707 kb on + strandat 289.815 kb on + strandat 289.973 kb on + strand, within SM_b20285at 289.974 kb on - strand, within SM_b20285at 289.974 kb on - strand, within SM_b20285at 289.974 kb on - strand, within SM_b20285at 289.974 kb on - strand, within SM_b20285at 289.974 kb on - strand, within SM_b20285at 290.092 kb on + strand, within SM_b20285at 290.092 kb on + strand, within SM_b20285at 290.422 kb on + strand, within SM_b20285

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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287,704 + SM_b20283 0.21 -1.1
287,704 + SM_b20283 0.21 +1.5
287,704 + SM_b20283 0.21 -0.6
287,705 - SM_b20283 0.22 -0.3
287,706 + SM_b20283 0.22 -0.1
287,706 + SM_b20283 0.22 -0.6
287,706 + SM_b20283 0.22 -2.5
287,706 + SM_b20283 0.22 -1.4
287,707 - SM_b20283 0.22 +4.9
287,707 - SM_b20283 0.22 -2.2
287,707 - SM_b20283 0.22 +0.7
287,707 - SM_b20283 0.22 +2.8
287,707 - SM_b20283 0.22 +0.6
287,839 + SM_b20283 0.35 +0.3
287,840 - SM_b20283 0.35 -0.5
287,857 + SM_b20283 0.37 +1.2
287,857 + SM_b20283 0.37 -0.6
287,858 - SM_b20283 0.37 +0.8
287,858 - SM_b20283 0.37 -0.5
287,872 + SM_b20283 0.39 +0.5
287,872 + SM_b20283 0.39 +0.5
287,872 + SM_b20283 0.39 -1.5
287,873 - SM_b20283 0.39 -0.2
287,873 - SM_b20283 0.39 +0.3
287,931 - SM_b20283 0.45 +0.1
288,085 + SM_b20283 0.60 +0.3
288,085 + SM_b20283 0.60 -0.2
288,085 + SM_b20283 0.60 -0.6
288,085 + SM_b20283 0.60 -1.3
288,086 - SM_b20283 0.60 +1.5
288,086 - SM_b20283 0.60 +0.0
288,241 + SM_b20283 0.76 -0.6
288,380 - -1.1
288,418 + -1.1
288,467 + -0.1
288,776 + SM_b20284 0.20 -0.1
288,791 + SM_b20284 0.21 +0.4
288,791 + SM_b20284 0.21 -0.6
288,791 + SM_b20284 0.21 -0.2
288,792 - SM_b20284 0.21 -0.1
288,793 + SM_b20284 0.21 -0.4
288,794 - SM_b20284 0.21 -1.2
288,839 - SM_b20284 0.25 +0.7
288,839 - SM_b20284 0.25 +1.5
288,851 - SM_b20284 0.26 +0.0
288,851 - SM_b20284 0.26 +0.3
288,851 - SM_b20284 0.26 +0.7
288,874 - SM_b20284 0.28 -0.3
288,874 - SM_b20284 0.28 +0.9
288,926 + SM_b20284 0.33 +1.4
288,937 + SM_b20284 0.34 +0.4
288,937 + SM_b20284 0.34 -0.4
288,938 - SM_b20284 0.34 +1.2
288,938 - SM_b20284 0.34 -2.7
288,938 - SM_b20284 0.34 -0.5
288,938 - SM_b20284 0.34 -0.5
288,986 - SM_b20284 0.39 -0.6
288,986 - SM_b20284 0.39 -1.3
288,988 + SM_b20284 0.39 +1.0
288,989 - SM_b20284 0.39 +0.0
289,022 - SM_b20284 0.42 +0.1
289,022 - SM_b20284 0.42 +0.1
289,072 + SM_b20284 0.46 -2.3
289,073 - SM_b20284 0.47 +0.8
289,138 + SM_b20284 0.52 +1.8
289,139 - SM_b20284 0.52 -0.0
289,139 - SM_b20284 0.52 -1.2
289,139 - SM_b20284 0.52 +0.1
289,156 + SM_b20284 0.54 +0.4
289,156 + SM_b20284 0.54 +0.7
289,156 + SM_b20284 0.54 -1.0
289,156 + SM_b20284 0.54 +0.8
289,199 + SM_b20284 0.58 -0.5
289,199 + SM_b20284 0.58 +0.0
289,200 - SM_b20284 0.58 +1.0
289,201 + SM_b20284 0.58 -0.1
289,252 + SM_b20284 0.63 -4.0
289,291 + SM_b20284 0.66 +0.3
289,292 - SM_b20284 0.66 +1.6
289,439 - SM_b20284 0.80 +0.9
289,487 + SM_b20284 0.84 +0.5
289,509 - SM_b20284 0.86 +0.7
289,534 + SM_b20284 0.88 -0.1
289,534 + SM_b20284 0.88 +1.6
289,534 + SM_b20284 0.88 +0.3
289,534 + SM_b20284 0.88 -0.5
289,683 + -0.1
289,707 + +0.4
289,815 + -0.8
289,973 + SM_b20285 0.24 +0.2
289,974 - SM_b20285 0.24 +0.0
289,974 - SM_b20285 0.24 +0.2
289,974 - SM_b20285 0.24 -0.6
289,974 - SM_b20285 0.24 -0.4
289,974 - SM_b20285 0.24 -2.8
290,092 + SM_b20285 0.36 -0.0
290,092 + SM_b20285 0.36 +0.4
290,422 + SM_b20285 0.70 +0.2

Or see this region's nucleotide sequence