Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20027 and SM_b20028 are separated by 63 nucleotides SM_b20028 and SM_b20029 are separated by 439 nucleotides SM_b20029 and SM_b20030 overlap by 1 nucleotides
SM_b20027: SM_b20027 - hypothetical protein, at 37,805 to 39,310
_b20027
SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510
_b20028
SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423
_b20029
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 38.403 kb on - strand, within SM_b20027 at 38.598 kb on + strand, within SM_b20027 at 38.599 kb on - strand, within SM_b20027 at 38.640 kb on - strand, within SM_b20027 at 38.967 kb on - strand, within SM_b20027 at 39.014 kb on + strand, within SM_b20027 at 39.035 kb on + strand, within SM_b20027 at 39.036 kb on - strand, within SM_b20027 at 39.036 kb on - strand, within SM_b20027 at 39.036 kb on - strand, within SM_b20027 at 39.044 kb on + strand, within SM_b20027 at 39.044 kb on + strand, within SM_b20027 at 39.360 kb on + strand at 39.360 kb on + strand at 39.405 kb on - strand at 39.451 kb on + strand at 39.452 kb on - strand at 39.452 kb on - strand at 39.452 kb on - strand at 39.453 kb on + strand at 39.453 kb on + strand at 39.453 kb on + strand at 39.453 kb on + strand at 39.454 kb on - strand at 39.454 kb on - strand at 39.454 kb on - strand at 39.458 kb on + strand at 39.458 kb on + strand at 39.458 kb on + strand at 39.458 kb on + strand at 39.458 kb on + strand at 39.458 kb on + strand at 39.459 kb on - strand at 39.459 kb on - strand at 39.459 kb on - strand at 39.492 kb on + strand, within SM_b20028 at 39.493 kb on - strand, within SM_b20028 at 39.522 kb on + strand, within SM_b20028 at 39.523 kb on - strand, within SM_b20028 at 39.671 kb on - strand, within SM_b20028 at 39.701 kb on + strand, within SM_b20028 at 39.702 kb on - strand, within SM_b20028 at 39.711 kb on + strand, within SM_b20028 at 39.711 kb on + strand, within SM_b20028 at 39.712 kb on - strand, within SM_b20028 at 39.712 kb on - strand, within SM_b20028 at 39.731 kb on + strand, within SM_b20028 at 39.731 kb on + strand, within SM_b20028 at 39.731 kb on + strand, within SM_b20028 at 39.731 kb on + strand, within SM_b20028 at 39.761 kb on + strand, within SM_b20028 at 39.771 kb on - strand, within SM_b20028 at 39.817 kb on - strand, within SM_b20028 at 39.817 kb on - strand, within SM_b20028 at 39.874 kb on + strand, within SM_b20028 at 39.875 kb on - strand, within SM_b20028 at 39.953 kb on + strand, within SM_b20028 at 39.953 kb on + strand, within SM_b20028 at 40.020 kb on - strand, within SM_b20028 at 40.020 kb on - strand, within SM_b20028 at 40.068 kb on + strand, within SM_b20028 at 40.069 kb on - strand, within SM_b20028 at 40.150 kb on - strand, within SM_b20028 at 40.173 kb on + strand, within SM_b20028 at 40.173 kb on + strand, within SM_b20028 at 40.174 kb on - strand, within SM_b20028 at 40.239 kb on + strand, within SM_b20028 at 40.345 kb on + strand, within SM_b20028 at 40.346 kb on - strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.347 kb on + strand, within SM_b20028 at 40.348 kb on - strand, within SM_b20028 at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.514 kb on + strand at 40.515 kb on - strand at 40.515 kb on - strand at 40.528 kb on + strand at 40.547 kb on + strand at 40.547 kb on + strand at 40.548 kb on - strand at 40.548 kb on - strand at 40.565 kb on + strand at 40.565 kb on + strand at 40.566 kb on - strand at 40.597 kb on + strand at 40.598 kb on - strand at 40.598 kb on - strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 41.048 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.188 kb on - strand, within SM_b20029 at 41.268 kb on + strand, within SM_b20029 at 41.330 kb on + strand, within SM_b20029
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 38,403 - SM_b20027 0.40 -0.3 38,598 + SM_b20027 0.53 +0.5 38,599 - SM_b20027 0.53 -0.0 38,640 - SM_b20027 0.55 -0.5 38,967 - SM_b20027 0.77 -0.1 39,014 + SM_b20027 0.80 +0.3 39,035 + SM_b20027 0.82 -0.7 39,036 - SM_b20027 0.82 -0.3 39,036 - SM_b20027 0.82 -0.5 39,036 - SM_b20027 0.82 +0.5 39,044 + SM_b20027 0.82 -0.0 39,044 + SM_b20027 0.82 +0.8 39,360 + -1.9 39,360 + -1.0 39,405 - +0.5 39,451 + -0.3 39,452 - -0.4 39,452 - +0.1 39,452 - +0.7 39,453 + -1.9 39,453 + -0.7 39,453 + -1.5 39,453 + -0.3 39,454 - +0.9 39,454 - +0.1 39,454 - -1.4 39,458 + +0.3 39,458 + -0.3 39,458 + -1.5 39,458 + -0.6 39,458 + -1.3 39,458 + +0.0 39,459 - -1.0 39,459 - +0.1 39,459 - +0.4 39,492 + SM_b20028 0.10 -0.1 39,493 - SM_b20028 0.10 +0.6 39,522 + SM_b20028 0.13 -0.9 39,523 - SM_b20028 0.13 +0.0 39,671 - SM_b20028 0.26 +1.3 39,701 + SM_b20028 0.29 -0.4 39,702 - SM_b20028 0.29 +4.3 39,711 + SM_b20028 0.30 -0.5 39,711 + SM_b20028 0.30 -0.4 39,712 - SM_b20028 0.30 -0.2 39,712 - SM_b20028 0.30 +0.8 39,731 + SM_b20028 0.31 +0.7 39,731 + SM_b20028 0.31 -0.2 39,731 + SM_b20028 0.31 +1.1 39,731 + SM_b20028 0.31 -0.3 39,761 + SM_b20028 0.34 +0.6 39,771 - SM_b20028 0.35 +0.6 39,817 - SM_b20028 0.39 -0.2 39,817 - SM_b20028 0.39 +0.1 39,874 + SM_b20028 0.44 -0.8 39,875 - SM_b20028 0.44 -1.8 39,953 + SM_b20028 0.51 +0.4 39,953 + SM_b20028 0.51 +0.5 40,020 - SM_b20028 0.57 +0.8 40,020 - SM_b20028 0.57 -0.2 40,068 + SM_b20028 0.61 +0.1 40,069 - SM_b20028 0.61 +0.1 40,150 - SM_b20028 0.68 -0.3 40,173 + SM_b20028 0.70 -1.3 40,173 + SM_b20028 0.70 -0.5 40,174 - SM_b20028 0.70 +0.8 40,239 + SM_b20028 0.76 +4.1 40,345 + SM_b20028 0.85 +0.6 40,346 - SM_b20028 0.85 -1.7 40,347 + SM_b20028 0.86 +0.9 40,347 + SM_b20028 0.86 +0.3 40,347 + SM_b20028 0.86 +0.6 40,347 + SM_b20028 0.86 -0.4 40,348 - SM_b20028 0.86 +1.4 40,510 + +2.0 40,510 + -0.6 40,510 + -2.4 40,510 + -0.4 40,511 - -0.4 40,511 - -0.4 40,511 - -1.6 40,511 - +0.2 40,511 - -1.5 40,512 + -0.4 40,512 + +0.6 40,512 + -0.2 40,512 + -0.3 40,512 + +0.4 40,512 + -0.4 40,512 + -0.2 40,513 - -0.2 40,513 - -0.3 40,513 - -1.7 40,513 - -0.2 40,513 - -1.8 40,513 - +1.0 40,514 + +0.1 40,515 - -0.0 40,515 - +0.9 40,528 + -0.2 40,547 + -1.1 40,547 + -0.1 40,548 - -0.3 40,548 - +0.7 40,565 + -0.5 40,565 + +0.5 40,566 - +0.1 40,597 + +0.9 40,598 - +0.3 40,598 - +0.8 40,801 + +0.1 40,801 + -0.0 40,801 + +1.0 40,801 + -0.5 40,801 + +0.0 40,802 - +1.3 40,802 - +0.3 40,802 - +1.6 40,802 - +0.4 40,802 - -1.1 41,048 + SM_b20029 0.21 -0.7 41,154 + SM_b20029 0.43 -0.3 41,154 + SM_b20029 0.43 +1.0 41,155 - SM_b20029 0.43 -0.6 41,155 - SM_b20029 0.43 +1.3 41,188 - SM_b20029 0.50 +1.6 41,268 + SM_b20029 0.67 +2.6 41,330 + SM_b20029 0.80 -0.5
Or see this region's nucleotide sequence