Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5979

Experiment: methylglyoxal 0.004 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5978 and Pf1N1B4_5979 are separated by 120 nucleotidesPf1N1B4_5979 and Pf1N1B4_5980 are separated by 255 nucleotidesPf1N1B4_5980 and Pf1N1B4_5981 are separated by 239 nucleotides Pf1N1B4_5978 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 426,416 to 427,996 _5978 Pf1N1B4_5979 - Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-), at 428,117 to 429,124 _5979 Pf1N1B4_5980 - Organic hydroperoxide resistance protein, at 429,380 to 429,832 _5980 Pf1N1B4_5981 - Organic hydroperoxide resistance transcriptional regulator, at 430,072 to 430,533 _5981 Position (kb) 428 429 430Strain fitness (log2 ratio) -2 -1 0 1at 427.141 kb on - strand, within Pf1N1B4_5978at 427.442 kb on + strand, within Pf1N1B4_5978at 427.483 kb on - strand, within Pf1N1B4_5978at 428.145 kb on + strandat 428.146 kb on - strandat 428.146 kb on - strandat 428.361 kb on + strand, within Pf1N1B4_5979at 428.362 kb on - strand, within Pf1N1B4_5979at 428.362 kb on - strand, within Pf1N1B4_5979at 428.711 kb on - strand, within Pf1N1B4_5979at 428.711 kb on - strand, within Pf1N1B4_5979at 429.214 kb on + strandat 429.236 kb on - strandat 429.684 kb on - strand, within Pf1N1B4_5980at 429.859 kb on - strandat 429.859 kb on - strandat 429.906 kb on + strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
remove
427,141 - Pf1N1B4_5978 0.46 -0.1
427,442 + Pf1N1B4_5978 0.65 -0.8
427,483 - Pf1N1B4_5978 0.67 -0.8
428,145 + +0.0
428,146 - -0.4
428,146 - -0.6
428,361 + Pf1N1B4_5979 0.24 -0.8
428,362 - Pf1N1B4_5979 0.24 -1.4
428,362 - Pf1N1B4_5979 0.24 -0.6
428,711 - Pf1N1B4_5979 0.59 -0.4
428,711 - Pf1N1B4_5979 0.59 -0.0
429,214 + +1.0
429,236 - +1.2
429,684 - Pf1N1B4_5980 0.67 +0.2
429,859 - +0.6
429,859 - -0.5
429,906 + -1.6
429,907 - +0.2
429,907 - +1.1
429,907 - -2.4
429,907 - +0.8
429,907 - -1.4
429,907 - +0.2

Or see this region's nucleotide sequence