Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5910 and Pf1N1B4_5911 overlap by 8 nucleotides Pf1N1B4_5911 and Pf1N1B4_5912 are separated by 275 nucleotides Pf1N1B4_5912 and Pf1N1B4_5913 are separated by 151 nucleotides Pf1N1B4_5913 and Pf1N1B4_5914 are separated by 210 nucleotides
Pf1N1B4_5910 - putative membrane protein, at 353,971 to 354,561
_5910
Pf1N1B4_5911 - DoxX family protein, at 354,554 to 354,970
_5911
Pf1N1B4_5912 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 355,246 to 355,614
_5912
Pf1N1B4_5913 - hypothetical protein, at 355,766 to 355,930
_5913
Pf1N1B4_5914 - Transcriptional regulator, LysR family, at 356,141 to 357,064
_5914
Position (kb) 355
356 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 354.801 kb on - strand at 354.858 kb on + strand, within Pf1N1B4_5911 at 354.858 kb on + strand at 355.036 kb on + strand at 355.036 kb on + strand at 355.037 kb on - strand at 355.037 kb on - strand at 355.037 kb on - strand at 355.341 kb on + strand, within Pf1N1B4_5912 at 355.342 kb on - strand, within Pf1N1B4_5912 at 355.342 kb on - strand, within Pf1N1B4_5912 at 355.427 kb on - strand, within Pf1N1B4_5912 at 355.427 kb on - strand, within Pf1N1B4_5912 at 355.460 kb on + strand at 355.565 kb on + strand, within Pf1N1B4_5912 at 355.565 kb on + strand, within Pf1N1B4_5912 at 355.631 kb on - strand at 355.631 kb on - strand at 355.668 kb on - strand at 355.668 kb on - strand at 355.706 kb on + strand at 355.706 kb on + strand at 355.706 kb on + strand at 355.707 kb on - strand at 355.707 kb on - strand at 355.707 kb on - strand at 355.708 kb on + strand at 355.708 kb on + strand at 355.708 kb on + strand at 355.708 kb on + strand at 355.781 kb on + strand at 355.782 kb on - strand at 355.803 kb on + strand, within Pf1N1B4_5913 at 355.805 kb on + strand, within Pf1N1B4_5913 at 355.806 kb on - strand at 355.928 kb on + strand at 355.929 kb on - strand at 355.929 kb on - strand at 355.929 kb on - strand at 355.943 kb on - strand at 355.943 kb on - strand at 355.958 kb on + strand at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.293 kb on + strand, within Pf1N1B4_5914 at 356.322 kb on + strand, within Pf1N1B4_5914 at 356.598 kb on + strand, within Pf1N1B4_5914
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 354,801 - +3.7 354,858 + Pf1N1B4_5911 0.73 -0.2 354,858 + -0.8 355,036 + -0.1 355,036 + +0.9 355,037 - -2.4 355,037 - -2.1 355,037 - -0.5 355,341 + Pf1N1B4_5912 0.26 +0.8 355,342 - Pf1N1B4_5912 0.26 -0.5 355,342 - Pf1N1B4_5912 0.26 -1.0 355,427 - Pf1N1B4_5912 0.49 -2.1 355,427 - Pf1N1B4_5912 0.49 -1.4 355,460 + +0.2 355,565 + Pf1N1B4_5912 0.86 -1.8 355,565 + Pf1N1B4_5912 0.86 -1.2 355,631 - +0.2 355,631 - +2.3 355,668 - -0.9 355,668 - +0.4 355,706 + -0.8 355,706 + -0.1 355,706 + -1.0 355,707 - +1.7 355,707 - -1.8 355,707 - +0.4 355,708 + +0.2 355,708 + -0.8 355,708 + +1.5 355,708 + +0.2 355,781 + +0.6 355,782 - -0.8 355,803 + Pf1N1B4_5913 0.22 +1.0 355,805 + Pf1N1B4_5913 0.24 +0.5 355,806 - +0.7 355,928 + -0.1 355,929 - -0.2 355,929 - -0.5 355,929 - -1.0 355,943 - +1.8 355,943 - -1.6 355,958 + +1.4 356,293 + Pf1N1B4_5914 0.16 -1.0 356,293 + Pf1N1B4_5914 0.16 -0.3 356,293 + Pf1N1B4_5914 0.16 -0.4 356,293 + Pf1N1B4_5914 0.16 -1.1 356,293 + Pf1N1B4_5914 0.16 +0.2 356,322 + Pf1N1B4_5914 0.20 +0.6 356,598 + Pf1N1B4_5914 0.49 +0.6
Or see this region's nucleotide sequence