Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5342

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5340 and Pf1N1B4_5341 are separated by 357 nucleotidesPf1N1B4_5341 and Pf1N1B4_5342 are separated by 109 nucleotidesPf1N1B4_5342 and Pf1N1B4_5343 are separated by 88 nucleotidesPf1N1B4_5343 and Pf1N1B4_5344 are separated by 158 nucleotides Pf1N1B4_5340 - hypothetical protein, at 83,949 to 84,311 _5340 Pf1N1B4_5341 - hypothetical protein, at 84,669 to 84,830 _5341 Pf1N1B4_5342 - hypothetical protein, at 84,940 to 85,110 _5342 Pf1N1B4_5343 - hypothetical protein, at 85,199 to 85,933 _5343 Pf1N1B4_5344 - hypothetical protein, at 86,092 to 86,823 _5344 Position (kb) 84 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 84.023 kb on + strand, within Pf1N1B4_5340at 84.023 kb on + strand, within Pf1N1B4_5340at 84.187 kb on + strand, within Pf1N1B4_5340at 84.187 kb on + strand, within Pf1N1B4_5340at 84.187 kb on + strand, within Pf1N1B4_5340at 84.188 kb on - strand, within Pf1N1B4_5340at 84.188 kb on - strand, within Pf1N1B4_5340at 84.188 kb on - strand, within Pf1N1B4_5340at 84.580 kb on + strandat 84.580 kb on + strandat 84.580 kb on + strandat 84.581 kb on - strandat 84.643 kb on - strandat 84.696 kb on + strand, within Pf1N1B4_5341at 84.907 kb on + strandat 84.907 kb on + strandat 84.907 kb on + strandat 84.908 kb on - strandat 85.007 kb on + strand, within Pf1N1B4_5342at 85.007 kb on + strand, within Pf1N1B4_5342at 85.125 kb on - strandat 85.128 kb on + strandat 85.129 kb on + strandat 85.129 kb on + strandat 85.129 kb on + strandat 85.130 kb on - strandat 85.378 kb on + strand, within Pf1N1B4_5343at 85.378 kb on + strand, within Pf1N1B4_5343at 85.378 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.384 kb on + strand, within Pf1N1B4_5343at 85.385 kb on - strand, within Pf1N1B4_5343at 85.385 kb on - strand, within Pf1N1B4_5343at 85.385 kb on - strand, within Pf1N1B4_5343at 85.385 kb on - strandat 85.385 kb on - strand, within Pf1N1B4_5343at 85.425 kb on + strand, within Pf1N1B4_5343at 85.425 kb on + strand, within Pf1N1B4_5343at 85.426 kb on - strand, within Pf1N1B4_5343at 85.605 kb on + strand, within Pf1N1B4_5343at 85.605 kb on + strand, within Pf1N1B4_5343at 85.605 kb on + strand, within Pf1N1B4_5343at 85.605 kb on + strand, within Pf1N1B4_5343at 85.605 kb on + strand, within Pf1N1B4_5343at 85.606 kb on - strand, within Pf1N1B4_5343at 85.606 kb on - strand, within Pf1N1B4_5343at 85.641 kb on - strand, within Pf1N1B4_5343at 85.641 kb on - strandat 85.646 kb on + strand, within Pf1N1B4_5343at 85.657 kb on + strand, within Pf1N1B4_5343at 85.657 kb on + strand, within Pf1N1B4_5343at 85.657 kb on + strand, within Pf1N1B4_5343at 85.657 kb on + strand, within Pf1N1B4_5343at 85.657 kb on + strand, within Pf1N1B4_5343at 85.658 kb on - strand, within Pf1N1B4_5343at 85.658 kb on - strand, within Pf1N1B4_5343at 85.658 kb on - strand, within Pf1N1B4_5343at 85.659 kb on + strand, within Pf1N1B4_5343at 85.660 kb on - strand, within Pf1N1B4_5343at 85.660 kb on - strand, within Pf1N1B4_5343at 85.767 kb on + strand, within Pf1N1B4_5343at 85.768 kb on - strand, within Pf1N1B4_5343at 85.768 kb on - strand, within Pf1N1B4_5343at 85.788 kb on + strand, within Pf1N1B4_5343at 85.789 kb on - strand, within Pf1N1B4_5343at 85.789 kb on - strand, within Pf1N1B4_5343at 85.858 kb on + strand, within Pf1N1B4_5343at 85.937 kb on + strandat 85.938 kb on - strandat 85.944 kb on + strandat 85.944 kb on + strandat 85.944 kb on + strandat 85.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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84,023 + Pf1N1B4_5340 0.20 +0.8
84,023 + Pf1N1B4_5340 0.20 -0.4
84,187 + Pf1N1B4_5340 0.66 +0.2
84,187 + Pf1N1B4_5340 0.66 +0.1
84,187 + Pf1N1B4_5340 0.66 -0.1
84,188 - Pf1N1B4_5340 0.66 +0.3
84,188 - Pf1N1B4_5340 0.66 -1.4
84,188 - Pf1N1B4_5340 0.66 -0.7
84,580 + +1.4
84,580 + +0.3
84,580 + +0.6
84,581 - +0.1
84,643 - +1.8
84,696 + Pf1N1B4_5341 0.17 +0.1
84,907 + +0.0
84,907 + -2.9
84,907 + -0.7
84,908 - +1.6
85,007 + Pf1N1B4_5342 0.39 -0.6
85,007 + Pf1N1B4_5342 0.39 -1.2
85,125 - +1.6
85,128 + +1.1
85,129 + +0.4
85,129 + +0.3
85,129 + -1.0
85,130 - -0.8
85,378 + Pf1N1B4_5343 0.24 +0.3
85,378 + Pf1N1B4_5343 0.24 +0.8
85,378 + Pf1N1B4_5343 0.24 +0.3
85,384 + Pf1N1B4_5343 0.25 +0.7
85,384 + Pf1N1B4_5343 0.25 +0.1
85,384 + Pf1N1B4_5343 0.25 +0.4
85,384 + Pf1N1B4_5343 0.25 -0.9
85,384 + Pf1N1B4_5343 0.25 -0.2
85,384 + Pf1N1B4_5343 0.25 -2.3
85,384 + Pf1N1B4_5343 0.25 -0.9
85,384 + Pf1N1B4_5343 0.25 +0.6
85,384 + Pf1N1B4_5343 0.25 -2.0
85,384 + Pf1N1B4_5343 0.25 +1.1
85,385 - Pf1N1B4_5343 0.25 -1.4
85,385 - Pf1N1B4_5343 0.25 +1.1
85,385 - Pf1N1B4_5343 0.25 -2.0
85,385 - +0.6
85,385 - Pf1N1B4_5343 0.25 +0.3
85,425 + Pf1N1B4_5343 0.31 -0.7
85,425 + Pf1N1B4_5343 0.31 -1.0
85,426 - Pf1N1B4_5343 0.31 -0.1
85,605 + Pf1N1B4_5343 0.55 -0.9
85,605 + Pf1N1B4_5343 0.55 -0.2
85,605 + Pf1N1B4_5343 0.55 -2.3
85,605 + Pf1N1B4_5343 0.55 -0.1
85,605 + Pf1N1B4_5343 0.55 -1.4
85,606 - Pf1N1B4_5343 0.55 +0.3
85,606 - Pf1N1B4_5343 0.55 +0.6
85,641 - Pf1N1B4_5343 0.60 -0.3
85,641 - +1.6
85,646 + Pf1N1B4_5343 0.61 +0.6
85,657 + Pf1N1B4_5343 0.62 +3.4
85,657 + Pf1N1B4_5343 0.62 +0.7
85,657 + Pf1N1B4_5343 0.62 -1.4
85,657 + Pf1N1B4_5343 0.62 +1.1
85,657 + Pf1N1B4_5343 0.62 -0.8
85,658 - Pf1N1B4_5343 0.62 -0.1
85,658 - Pf1N1B4_5343 0.62 -0.7
85,658 - Pf1N1B4_5343 0.62 -0.4
85,659 + Pf1N1B4_5343 0.63 +0.3
85,660 - Pf1N1B4_5343 0.63 -0.0
85,660 - Pf1N1B4_5343 0.63 -0.3
85,767 + Pf1N1B4_5343 0.77 -1.0
85,768 - Pf1N1B4_5343 0.77 +0.2
85,768 - Pf1N1B4_5343 0.77 +0.1
85,788 + Pf1N1B4_5343 0.80 -1.0
85,789 - Pf1N1B4_5343 0.80 -0.2
85,789 - Pf1N1B4_5343 0.80 -1.3
85,858 + Pf1N1B4_5343 0.90 -0.2
85,937 + -2.5
85,938 - -0.4
85,944 + +0.3
85,944 + +0.6
85,944 + -2.0
85,944 + -1.0

Or see this region's nucleotide sequence