Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5029 and Pf1N1B4_5030 are separated by 0 nucleotides Pf1N1B4_5030 and Pf1N1B4_5031 are separated by 3 nucleotides Pf1N1B4_5031 and Pf1N1B4_5032 are separated by 75 nucleotides
Pf1N1B4_5029 - Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1), at 5,575,475 to 5,576,233
_5029
Pf1N1B4_5030 - Molybdenum transport system permease protein ModB (TC 3.A.1.8.1), at 5,576,234 to 5,576,914
_5030
Pf1N1B4_5031 - Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1), at 5,576,918 to 5,577,997
_5031
Pf1N1B4_5032 - Hypothetical protein PA2244 (similar to DNA topoisomerase IB, but possibly involved in glycosyl-transfer), at 5,578,073 to 5,579,110
_5032
Position (kb) 5576
5577
5578 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5576.049 kb on - strand, within Pf1N1B4_5029 at 5576.138 kb on - strand, within Pf1N1B4_5029 at 5576.177 kb on + strand at 5576.231 kb on + strand at 5576.232 kb on - strand at 5576.426 kb on + strand, within Pf1N1B4_5030 at 5576.427 kb on - strand, within Pf1N1B4_5030 at 5576.427 kb on - strand, within Pf1N1B4_5030 at 5576.427 kb on - strand at 5576.537 kb on + strand, within Pf1N1B4_5030 at 5576.730 kb on + strand, within Pf1N1B4_5030 at 5576.731 kb on - strand, within Pf1N1B4_5030 at 5576.733 kb on + strand, within Pf1N1B4_5030 at 5576.733 kb on + strand, within Pf1N1B4_5030 at 5576.734 kb on - strand at 5576.789 kb on + strand, within Pf1N1B4_5030 at 5576.789 kb on + strand, within Pf1N1B4_5030 at 5576.790 kb on - strand, within Pf1N1B4_5030 at 5576.790 kb on - strand, within Pf1N1B4_5030 at 5576.890 kb on + strand at 5576.946 kb on - strand at 5577.375 kb on + strand, within Pf1N1B4_5031 at 5577.376 kb on - strand, within Pf1N1B4_5031 at 5577.376 kb on - strand, within Pf1N1B4_5031 at 5577.376 kb on - strand, within Pf1N1B4_5031 at 5577.462 kb on + strand, within Pf1N1B4_5031 at 5577.462 kb on + strand at 5577.462 kb on + strand, within Pf1N1B4_5031 at 5577.462 kb on + strand, within Pf1N1B4_5031 at 5577.463 kb on - strand, within Pf1N1B4_5031 at 5577.650 kb on + strand, within Pf1N1B4_5031 at 5577.868 kb on - strand, within Pf1N1B4_5031 at 5578.037 kb on + strand at 5578.119 kb on - strand at 5578.376 kb on + strand, within Pf1N1B4_5032 at 5578.377 kb on - strand, within Pf1N1B4_5032 at 5578.487 kb on - strand, within Pf1N1B4_5032 at 5578.487 kb on - strand, within Pf1N1B4_5032 at 5578.530 kb on - strand, within Pf1N1B4_5032 at 5578.772 kb on + strand, within Pf1N1B4_5032 at 5578.776 kb on + strand, within Pf1N1B4_5032 at 5578.777 kb on - strand at 5578.964 kb on + strand, within Pf1N1B4_5032 at 5578.965 kb on - strand at 5578.965 kb on - strand, within Pf1N1B4_5032
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 5,576,049 - Pf1N1B4_5029 0.76 -0.4 5,576,138 - Pf1N1B4_5029 0.87 -0.3 5,576,177 + +0.3 5,576,231 + -0.8 5,576,232 - +0.4 5,576,426 + Pf1N1B4_5030 0.28 -1.2 5,576,427 - Pf1N1B4_5030 0.28 -1.1 5,576,427 - Pf1N1B4_5030 0.28 +0.2 5,576,427 - +0.0 5,576,537 + Pf1N1B4_5030 0.44 +0.8 5,576,730 + Pf1N1B4_5030 0.73 +2.0 5,576,731 - Pf1N1B4_5030 0.73 +0.0 5,576,733 + Pf1N1B4_5030 0.73 +1.0 5,576,733 + Pf1N1B4_5030 0.73 +1.0 5,576,734 - +0.0 5,576,789 + Pf1N1B4_5030 0.81 +0.0 5,576,789 + Pf1N1B4_5030 0.81 +0.8 5,576,790 - Pf1N1B4_5030 0.82 +0.2 5,576,790 - Pf1N1B4_5030 0.82 -0.4 5,576,890 + -2.3 5,576,946 - -0.6 5,577,375 + Pf1N1B4_5031 0.42 -1.6 5,577,376 - Pf1N1B4_5031 0.42 -0.5 5,577,376 - Pf1N1B4_5031 0.42 -1.0 5,577,376 - Pf1N1B4_5031 0.42 -1.2 5,577,462 + Pf1N1B4_5031 0.50 -1.0 5,577,462 + +0.7 5,577,462 + Pf1N1B4_5031 0.50 -0.4 5,577,462 + Pf1N1B4_5031 0.50 -1.9 5,577,463 - Pf1N1B4_5031 0.50 -1.4 5,577,650 + Pf1N1B4_5031 0.68 +0.0 5,577,868 - Pf1N1B4_5031 0.88 -0.2 5,578,037 + +0.6 5,578,119 - -0.3 5,578,376 + Pf1N1B4_5032 0.29 -0.6 5,578,377 - Pf1N1B4_5032 0.29 +0.2 5,578,487 - Pf1N1B4_5032 0.40 +0.5 5,578,487 - Pf1N1B4_5032 0.40 -1.0 5,578,530 - Pf1N1B4_5032 0.44 -1.3 5,578,772 + Pf1N1B4_5032 0.67 -0.6 5,578,776 + Pf1N1B4_5032 0.68 +1.0 5,578,777 - -1.3 5,578,964 + Pf1N1B4_5032 0.86 -1.0 5,578,965 - -1.6 5,578,965 - Pf1N1B4_5032 0.86 +0.4
Or see this region's nucleotide sequence