Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3906

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,336,519	-				+0.6
4,336,581	-		Pf1N1B4_3905	0.13	-0.0
4,336,581	-		Pf1N1B4_3905	0.13	+0.3
4,336,581	-		Pf1N1B4_3905	0.13	-0.5
4,336,581	-		Pf1N1B4_3905	0.13	-0.2
4,336,581	-		Pf1N1B4_3905	0.13	+0.3
4,336,603	-		Pf1N1B4_3905	0.22	-1.3
4,336,603	-		Pf1N1B4_3905	0.22	-0.2
4,336,603	-		Pf1N1B4_3905	0.22	+1.0
4,336,649	+		Pf1N1B4_3905	0.42	+2.1
4,336,650	-		Pf1N1B4_3905	0.42	+0.8
4,336,650	-				+0.3
4,336,650	-		Pf1N1B4_3905	0.42	+1.0
4,336,835	+				-0.5
4,336,835	+				-2.0
4,336,835	+				-2.3
4,336,835	+				-1.3
4,336,837	+				-0.3
4,336,837	+				+1.2
4,336,837	+				-2.0
4,336,837	+				-0.4
4,336,837	+				-0.3
4,336,837	+				+0.3
4,336,837	+				-1.5
4,336,839	+				-2.7
4,336,877	+				-0.5
4,336,877	+				+0.0
4,336,877	+				-0.5
4,336,877	+				-1.3
4,339,220	+		Pf1N1B4_3906	0.88	+0.8
4,339,220	+		Pf1N1B4_3906	0.88	-1.7
4,339,220	+		Pf1N1B4_3906	0.88	-1.1
4,339,220	+		Pf1N1B4_3906	0.88	-0.9
4,339,220	+		Pf1N1B4_3906	0.88	-1.8
4,339,220	+		Pf1N1B4_3906	0.88	-0.8
4,339,220	+				-1.7
4,339,220	+		Pf1N1B4_3906	0.88	+0.1
4,339,220	+		Pf1N1B4_3906	0.88	-0.4
4,339,221	-		Pf1N1B4_3906	0.88	-2.1
4,339,427	+				-0.9
4,339,428	-				-3.0
4,339,526	+				-0.4
4,339,526	+				+1.0
4,339,537	-				-1.3
4,339,644	-				+0.5
4,339,644	-				-0.7
4,339,644	-				-1.7
4,339,682	+				+0.7
4,339,682	+				+0.6
4,339,683	-				-0.8
4,339,683	-				+2.3
4,339,683	-				+0.1
4,339,683	-				+1.3
4,339,706	+				+0.7
4,339,707	-				-0.5
4,339,707	-				+0.0
4,339,707	-				+0.0
4,339,707	-				-0.3
4,339,707	-				-0.7
4,339,857	-		Pf1N1B4_3907	0.36	+1.6
4,339,928	-		Pf1N1B4_3907	0.50	-0.3
4,340,064	+		Pf1N1B4_3907	0.76	+1.3
4,340,077	+		Pf1N1B4_3907	0.78	-0.1
4,340,147	-				+1.2
4,340,299	+				+0.1
4,340,299	+				+0.9
4,340,299	+				-2.5
4,340,299	+				-0.0
4,340,300	-				+1.3
4,340,300	-				+0.3
4,340,300	-				-0.7
4,340,301	+				-0.9
4,340,301	+				+0.9
4,340,301	+				-0.2
4,340,301	+				-0.1
4,340,302	-				-2.5
4,340,302	-				+0.4