Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3816

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
4,226,174	+				-0.6
4,226,202	-				+0.3
4,226,413	+		Pf1N1B4_3815	0.24	-0.6
4,226,414	-		Pf1N1B4_3815	0.24	-2.6
4,226,414	-		Pf1N1B4_3815	0.24	-0.6
4,226,414	-		Pf1N1B4_3815	0.24	-1.4
4,226,414	-		Pf1N1B4_3815	0.24	-0.6
4,226,434	+		Pf1N1B4_3815	0.26	+0.8
4,226,435	-		Pf1N1B4_3815	0.26	-0.7
4,226,435	-		Pf1N1B4_3815	0.26	-1.3
4,226,435	-		Pf1N1B4_3815	0.26	+0.4
4,226,435	-		Pf1N1B4_3815	0.26	-0.2
4,226,435	-		Pf1N1B4_3815	0.26	+0.0
4,226,435	-		Pf1N1B4_3815	0.26	+1.4
4,226,698	+		Pf1N1B4_3815	0.52	+1.0
4,226,699	-		Pf1N1B4_3815	0.52	+0.4
4,226,699	-		Pf1N1B4_3815	0.52	+0.8
4,226,699	-		Pf1N1B4_3815	0.52	-1.6
4,226,699	-		Pf1N1B4_3815	0.52	-1.0
4,226,699	-		Pf1N1B4_3815	0.52	-1.6
4,226,699	-		Pf1N1B4_3815	0.52	-0.2
4,226,776	+		Pf1N1B4_3815	0.60	+1.7
4,226,776	+				+1.0
4,227,079	+				-0.2
4,227,079	+				-1.4
4,227,080	-				-2.3
4,227,080	-				-2.6
4,227,080	-				+0.9
4,227,080	-				+0.4
4,227,091	+				-0.6
4,227,091	+				-0.4
4,227,091	+				+0.1
4,227,091	+				-2.0
4,227,091	+				+1.0
4,227,092	-				-0.1
4,227,092	-				-0.8
4,227,092	-				-1.0
4,227,092	-				-0.6
4,227,092	-				+1.1
4,227,297	+				-1.2
4,227,297	+				-1.0
4,227,297	+				-1.0
4,227,297	+				-1.6
4,227,297	+				-0.6
4,227,298	-				-1.2
4,227,298	-				-0.2
4,227,576	+		Pf1N1B4_3816	0.27	+0.4
4,227,576	+				+0.4
4,227,576	+		Pf1N1B4_3816	0.27	+0.4
4,227,576	+		Pf1N1B4_3816	0.27	-0.1
4,227,576	+		Pf1N1B4_3816	0.27	-1.4
4,227,577	-		Pf1N1B4_3816	0.27	-0.6
4,227,577	-		Pf1N1B4_3816	0.27	+1.4
4,227,577	-				+1.4
4,227,577	-				+1.0
4,227,577	-				-0.6
4,227,613	+		Pf1N1B4_3816	0.29	+0.4
4,227,613	+				-1.0
4,227,613	+		Pf1N1B4_3816	0.29	-1.2
4,227,614	-		Pf1N1B4_3816	0.29	+0.4
4,227,614	-		Pf1N1B4_3816	0.29	-0.6
4,227,614	-		Pf1N1B4_3816	0.29	+0.4
4,227,614	-		Pf1N1B4_3816	0.29	-1.2
4,227,614	-		Pf1N1B4_3816	0.29	-1.2
4,227,617	+		Pf1N1B4_3816	0.29	+0.0
4,227,617	+		Pf1N1B4_3816	0.29	-1.1
4,227,617	+		Pf1N1B4_3816	0.29	-2.1
4,227,617	+		Pf1N1B4_3816	0.29	-2.1
4,227,617	+		Pf1N1B4_3816	0.29	-0.6
4,227,792	+		Pf1N1B4_3816	0.41	-0.7
4,227,793	-		Pf1N1B4_3816	0.41	-3.0
4,227,801	+		Pf1N1B4_3816	0.41	-0.2
4,227,993	+		Pf1N1B4_3816	0.54	+0.7
4,227,994	-		Pf1N1B4_3816	0.54	-0.5
4,228,106	+				-1.2
4,228,107	-		Pf1N1B4_3816	0.61	-0.0
4,228,107	-		Pf1N1B4_3816	0.61	-2.3
4,228,372	-		Pf1N1B4_3816	0.78	+0.1
4,228,453	-		Pf1N1B4_3816	0.84	-0.4
4,228,453	-		Pf1N1B4_3816	0.84	-1.2
4,228,488	+		Pf1N1B4_3816	0.86	-1.6
4,228,489	-		Pf1N1B4_3816	0.86	-0.1
4,228,508	+		Pf1N1B4_3816	0.87	-2.6
4,228,629	+				-0.2
4,228,709	+				-1.4
4,228,709	+				-1.2
4,228,709	+				-1.0
4,228,709	+				-2.0
4,228,710	-				-2.4
4,228,710	-				-0.2
4,228,710	-				-1.4
4,228,710	-				-0.6
4,228,719	+				-0.6
4,228,720	-				+1.0
4,228,757	+				-1.2
4,228,757	+				-0.3
4,228,757	+				-0.0
4,228,758	-				-0.4
4,228,758	-				+1.9
4,228,761	+				-0.6
4,228,761	+				-0.6
4,228,761	+				-0.6
4,228,762	-		Pf1N1B4_3817	0.10	-0.6
4,228,762	-		Pf1N1B4_3817	0.10	+0.0
4,228,867	+		Pf1N1B4_3817	0.30	-2.0
4,228,887	+		Pf1N1B4_3817	0.33	-1.2
4,228,916	+		Pf1N1B4_3817	0.39	-0.4
4,228,940	+		Pf1N1B4_3817	0.43	-0.5
4,228,940	+		Pf1N1B4_3817	0.43	-2.0
4,228,941	-		Pf1N1B4_3817	0.43	-1.1
4,229,024	+		Pf1N1B4_3817	0.59	-1.2
4,229,024	+		Pf1N1B4_3817	0.59	+0.1
4,229,024	+		Pf1N1B4_3817	0.59	-1.2
4,229,150	+		Pf1N1B4_3817	0.82	+1.4
4,229,165	+		Pf1N1B4_3817	0.85	-1.5
4,229,165	+		Pf1N1B4_3817	0.85	-1.4
4,229,244	+				+1.4
4,229,244	+				-0.5
4,229,244	+				-0.6
4,229,244	+				-1.2
4,229,311	+				-0.4
4,229,311	+				+0.4
4,229,311	+				-1.4
4,229,311	+				-1.0
4,229,317	+				-1.8
4,229,318	-				+0.4
4,229,371	+				-2.2
4,229,371	+				-0.6
4,229,371	+				-2.0
4,229,371	+				-1.1
4,229,371	+				-1.0
4,229,371	+				+0.9
4,229,385	+				-0.4
4,229,410	+				-1.2
4,229,412	+				-1.2
4,229,412	+				-0.4
4,229,412	+				+1.0
4,229,499	+				-0.6
4,229,542	+				-0.4
4,229,691	-		Pf1N1B4_3818	0.20	-1.6