Experiment: methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3478 and Pf1N1B4_3479 overlap by 4 nucleotides Pf1N1B4_3479 and Pf1N1B4_3480 are separated by 132 nucleotides
Pf1N1B4_3478 - Transcriptional regulatory protein RstA, at 3,884,929 to 3,885,651
_3478
Pf1N1B4_3479 - Sensor histidine kinase, at 3,885,648 to 3,887,258
_3479
Pf1N1B4_3480 - 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-); Holo-[acyl-carrier protein] synthase, alternative (EC 2.7.8.7), at 3,887,391 to 3,888,050
_3480
Position (kb)
3885
3886
3887
3888 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3884.680 kb on + strand at 3884.692 kb on + strand at 3884.693 kb on - strand at 3884.799 kb on + strand at 3884.830 kb on - strand at 3884.831 kb on + strand at 3884.832 kb on - strand at 3884.832 kb on - strand at 3884.832 kb on - strand at 3884.859 kb on - strand at 3884.875 kb on - strand at 3884.900 kb on + strand at 3884.998 kb on + strand at 3884.998 kb on + strand at 3884.999 kb on - strand at 3885.086 kb on + strand, within Pf1N1B4_3478 at 3885.151 kb on + strand, within Pf1N1B4_3478 at 3885.151 kb on + strand, within Pf1N1B4_3478 at 3885.151 kb on + strand, within Pf1N1B4_3478 at 3885.151 kb on + strand, within Pf1N1B4_3478 at 3885.151 kb on + strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.152 kb on - strand, within Pf1N1B4_3478 at 3885.232 kb on + strand, within Pf1N1B4_3478 at 3885.233 kb on - strand, within Pf1N1B4_3478 at 3885.233 kb on - strand, within Pf1N1B4_3478 at 3885.233 kb on - strand, within Pf1N1B4_3478 at 3885.233 kb on - strand, within Pf1N1B4_3478 at 3885.457 kb on - strand, within Pf1N1B4_3478 at 3885.476 kb on + strand, within Pf1N1B4_3478 at 3885.476 kb on + strand, within Pf1N1B4_3478 at 3885.477 kb on - strand, within Pf1N1B4_3478 at 3885.477 kb on - strand, within Pf1N1B4_3478 at 3885.672 kb on + strand at 3885.672 kb on + strand at 3885.672 kb on + strand at 3885.673 kb on - strand at 3886.068 kb on + strand, within Pf1N1B4_3479 at 3886.068 kb on + strand, within Pf1N1B4_3479 at 3886.068 kb on + strand, within Pf1N1B4_3479 at 3886.069 kb on - strand, within Pf1N1B4_3479 at 3886.069 kb on - strand, within Pf1N1B4_3479 at 3886.069 kb on - strand, within Pf1N1B4_3479 at 3886.320 kb on + strand, within Pf1N1B4_3479 at 3886.320 kb on + strand, within Pf1N1B4_3479 at 3886.320 kb on + strand, within Pf1N1B4_3479 at 3886.746 kb on + strand, within Pf1N1B4_3479 at 3886.746 kb on + strand, within Pf1N1B4_3479 at 3886.746 kb on + strand at 3886.746 kb on + strand, within Pf1N1B4_3479 at 3886.747 kb on - strand, within Pf1N1B4_3479 at 3886.747 kb on - strand, within Pf1N1B4_3479 at 3886.747 kb on - strand, within Pf1N1B4_3479 at 3886.747 kb on - strand, within Pf1N1B4_3479 at 3886.923 kb on + strand, within Pf1N1B4_3479 at 3886.923 kb on + strand, within Pf1N1B4_3479 at 3886.923 kb on + strand, within Pf1N1B4_3479 at 3886.924 kb on - strand, within Pf1N1B4_3479 at 3886.951 kb on + strand, within Pf1N1B4_3479 at 3886.952 kb on - strand, within Pf1N1B4_3479 at 3886.952 kb on - strand, within Pf1N1B4_3479 at 3886.952 kb on - strand, within Pf1N1B4_3479 at 3886.955 kb on + strand, within Pf1N1B4_3479 at 3886.955 kb on + strand, within Pf1N1B4_3479 at 3886.956 kb on - strand, within Pf1N1B4_3479 at 3886.996 kb on - strand, within Pf1N1B4_3479 at 3887.023 kb on + strand, within Pf1N1B4_3479 at 3887.024 kb on - strand, within Pf1N1B4_3479 at 3887.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol% remove 3,884,680 + -1.5 3,884,692 + -0.9 3,884,693 - -0.3 3,884,799 + +1.1 3,884,830 - +0.2 3,884,831 + +1.1 3,884,832 - -2.3 3,884,832 - +2.5 3,884,832 - -0.2 3,884,859 - -2.5 3,884,875 - -0.0 3,884,900 + -0.5 3,884,998 + -1.5 3,884,998 + -0.9 3,884,999 - +1.0 3,885,086 + Pf1N1B4_3478 0.22 +1.5 3,885,151 + Pf1N1B4_3478 0.31 +0.9 3,885,151 + Pf1N1B4_3478 0.31 -1.5 3,885,151 + Pf1N1B4_3478 0.31 +0.2 3,885,151 + Pf1N1B4_3478 0.31 -0.5 3,885,151 + Pf1N1B4_3478 0.31 -0.5 3,885,152 - Pf1N1B4_3478 0.31 -0.5 3,885,152 - Pf1N1B4_3478 0.31 -0.9 3,885,152 - Pf1N1B4_3478 0.31 +2.7 3,885,152 - Pf1N1B4_3478 0.31 +0.1 3,885,152 - Pf1N1B4_3478 0.31 +2.1 3,885,152 - Pf1N1B4_3478 0.31 +0.4 3,885,152 - Pf1N1B4_3478 0.31 +0.5 3,885,152 - Pf1N1B4_3478 0.31 +1.3 3,885,152 - Pf1N1B4_3478 0.31 -0.5 3,885,232 + Pf1N1B4_3478 0.42 +0.5 3,885,233 - Pf1N1B4_3478 0.42 +0.2 3,885,233 - Pf1N1B4_3478 0.42 -1.5 3,885,233 - Pf1N1B4_3478 0.42 -0.6 3,885,233 - Pf1N1B4_3478 0.42 +1.5 3,885,457 - Pf1N1B4_3478 0.73 -0.5 3,885,476 + Pf1N1B4_3478 0.76 +1.1 3,885,476 + Pf1N1B4_3478 0.76 -0.5 3,885,477 - Pf1N1B4_3478 0.76 +0.9 3,885,477 - Pf1N1B4_3478 0.76 +0.8 3,885,672 + -0.5 3,885,672 + +0.2 3,885,672 + -1.3 3,885,673 - -0.7 3,886,068 + Pf1N1B4_3479 0.26 -0.1 3,886,068 + Pf1N1B4_3479 0.26 +1.8 3,886,068 + Pf1N1B4_3479 0.26 -2.5 3,886,069 - Pf1N1B4_3479 0.26 -0.6 3,886,069 - Pf1N1B4_3479 0.26 -1.8 3,886,069 - Pf1N1B4_3479 0.26 +0.5 3,886,320 + Pf1N1B4_3479 0.42 +1.8 3,886,320 + Pf1N1B4_3479 0.42 -1.1 3,886,320 + Pf1N1B4_3479 0.42 -0.9 3,886,746 + Pf1N1B4_3479 0.68 -2.1 3,886,746 + Pf1N1B4_3479 0.68 -0.5 3,886,746 + +0.1 3,886,746 + Pf1N1B4_3479 0.68 +1.5 3,886,747 - Pf1N1B4_3479 0.68 -0.1 3,886,747 - Pf1N1B4_3479 0.68 -0.8 3,886,747 - Pf1N1B4_3479 0.68 -0.1 3,886,747 - Pf1N1B4_3479 0.68 -1.1 3,886,923 + Pf1N1B4_3479 0.79 -1.5 3,886,923 + Pf1N1B4_3479 0.79 +2.8 3,886,923 + Pf1N1B4_3479 0.79 -1.7 3,886,924 - Pf1N1B4_3479 0.79 -0.8 3,886,951 + Pf1N1B4_3479 0.81 +0.5 3,886,952 - Pf1N1B4_3479 0.81 +1.0 3,886,952 - Pf1N1B4_3479 0.81 +1.7 3,886,952 - Pf1N1B4_3479 0.81 +0.1 3,886,955 + Pf1N1B4_3479 0.81 -1.2 3,886,955 + Pf1N1B4_3479 0.81 -0.9 3,886,956 - Pf1N1B4_3479 0.81 -0.2 3,886,996 - Pf1N1B4_3479 0.84 -2.1 3,887,023 + Pf1N1B4_3479 0.85 -0.5 3,887,024 - Pf1N1B4_3479 0.85 -1.5 3,887,383 - -1.0
Or see this region's nucleotide sequence