Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3407

Experiment: methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.004 vol%
3,798,326	+		Pf1N1B4_3405	0.73	-1.1
3,798,327	-		Pf1N1B4_3405	0.73	+0.1
3,798,327	-		Pf1N1B4_3405	0.73	+0.5
3,798,341	+				-0.5
3,798,342	-		Pf1N1B4_3405	0.75	-0.6
3,798,342	-		Pf1N1B4_3405	0.75	-0.1
3,798,342	-		Pf1N1B4_3405	0.75	-0.7
3,798,342	-		Pf1N1B4_3405	0.75	-0.2
3,798,475	+		Pf1N1B4_3405	0.86	-1.1
3,798,475	+		Pf1N1B4_3405	0.86	-1.5
3,798,476	-		Pf1N1B4_3405	0.86	-0.2
3,798,687	-				-1.1
3,798,794	+				-1.1
3,798,794	+				-0.5
3,798,794	+				+0.0
3,798,795	-				+0.4
3,798,795	-				+0.3
3,798,795	-				+1.0
3,798,892	+		Pf1N1B4_3406	0.31	+0.5
3,799,130	+				+0.2
3,799,130	+				-0.5
3,799,130	+				-1.3
3,799,131	-				-1.1
3,799,159	+				-3.6
3,799,159	+				+0.3
3,799,160	-				+0.0
3,799,160	-				-0.5
3,799,160	-				-1.1
3,799,160	-				+1.6
3,799,160	-				-0.5
3,799,160	-				-1.2
3,799,160	-				-0.4
3,799,268	+				-0.0
3,799,268	+				-2.3
3,799,268	+				+1.3
3,799,268	+				-2.1
3,799,268	+				+0.3
3,799,269	-				+1.7
3,799,269	-				+0.8
3,799,269	-				+0.9
3,799,269	-				-0.6
3,799,269	-				+0.3
3,799,269	-				-1.8
3,799,269	-				+1.1
3,799,286	+				-0.1
3,799,286	+				-0.3
3,799,286	+				+2.1
3,799,286	+				-0.2
3,799,287	-				-0.4
3,799,287	-				-0.5
3,799,287	-				+0.5
3,799,287	-				+0.0
3,799,312	+				+0.9
3,799,312	+				-0.3
3,799,424	+		Pf1N1B4_3407	0.18	-2.1
3,799,703	+		Pf1N1B4_3407	0.50	-0.1
3,799,703	+		Pf1N1B4_3407	0.50	-1.8
3,799,874	+		Pf1N1B4_3407	0.69	-1.1
3,799,928	+		Pf1N1B4_3407	0.75	-0.7
3,799,928	+		Pf1N1B4_3407	0.75	+0.5
3,799,928	+		Pf1N1B4_3407	0.75	-0.7
3,799,929	-		Pf1N1B4_3407	0.75	-0.1
3,800,000	+		Pf1N1B4_3407	0.83	-2.3
3,800,000	+		Pf1N1B4_3407	0.83	-0.3
3,800,069	+				-2.1
3,800,069	+				+1.5
3,800,069	+				+1.0
3,800,069	+				-1.1
3,800,069	+				+0.1
3,800,070	-				+0.4
3,800,070	-				+0.9
3,800,070	-				+1.8
3,800,073	+				+0.9
3,800,074	-				-0.3
3,800,160	+				+0.5
3,800,161	-				-1.5
3,800,325	+		Pf1N1B4_3408	0.40	+0.8
3,800,325	+		Pf1N1B4_3408	0.40	+0.5
3,800,325	+		Pf1N1B4_3408	0.40	-0.1
3,800,385	+		Pf1N1B4_3408	0.54	-3.1
3,800,385	+				+2.5
3,800,385	+				-1.1
3,800,386	-		Pf1N1B4_3408	0.54	+1.5
3,800,386	-		Pf1N1B4_3408	0.54	+1.3
3,800,596	+				+0.9
3,800,596	+				+0.7
3,800,596	+				-1.1
3,800,596	+				+0.9
3,800,658	+				-0.6
3,800,658	+				-1.5
3,800,786	-				-0.2
3,800,889	-				+0.7
3,800,890	+				+1.7
3,800,890	+				-0.3
3,800,890	+				+2.5
3,800,890	+				+2.1
3,800,890	+				+1.5
3,800,891	-				+0.5
3,800,891	-				+0.9
3,800,891	-				+0.3
3,800,891	-				-0.5
3,800,891	-				-0.5
3,800,891	-				+0.3
3,800,983	+		Pf1N1B4_3409	0.13	+1.5
3,800,983	+		Pf1N1B4_3409	0.13	+1.3
3,800,983	+		Pf1N1B4_3409	0.13	+1.1
3,800,984	-		Pf1N1B4_3409	0.13	-0.1
3,800,984	-		Pf1N1B4_3409	0.13	+0.3
3,800,984	-		Pf1N1B4_3409	0.13	-0.1
3,800,984	-		Pf1N1B4_3409	0.13	+0.3
3,800,984	-		Pf1N1B4_3409	0.13	-0.5
3,800,984	-		Pf1N1B4_3409	0.13	-0.7
3,800,984	-		Pf1N1B4_3409	0.13	-2.1
3,800,984	-		Pf1N1B4_3409	0.13	+0.5
3,801,017	-		Pf1N1B4_3409	0.16	+0.3
3,801,017	-		Pf1N1B4_3409	0.16	-0.5
3,801,036	+		Pf1N1B4_3409	0.18	+0.2
3,801,036	+		Pf1N1B4_3409	0.18	+0.2
3,801,036	+		Pf1N1B4_3409	0.18	+1.5
3,801,036	+		Pf1N1B4_3409	0.18	+0.5
3,801,037	-		Pf1N1B4_3409	0.18	-0.5
3,801,037	-		Pf1N1B4_3409	0.18	-1.1
3,801,037	-		Pf1N1B4_3409	0.18	+1.2
3,801,049	+		Pf1N1B4_3409	0.19	+0.3
3,801,050	-		Pf1N1B4_3409	0.19	+0.4