Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1480

Experiment: methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1479 and Pf1N1B4_1480 are separated by 208 nucleotidesPf1N1B4_1480 and Pf1N1B4_1481 are separated by 83 nucleotides Pf1N1B4_1479 - Sensory box/GGDEF family protein, at 1,698,984 to 1,701,677 _1479 Pf1N1B4_1480 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 1,701,886 to 1,702,533 _1480 Pf1N1B4_1481 - Protein involved in catabolism of external DNA, at 1,702,617 to 1,703,453 _1481 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1700.893 kb on - strand, within Pf1N1B4_1479at 1700.893 kb on - strand, within Pf1N1B4_1479at 1700.955 kb on + strand, within Pf1N1B4_1479at 1700.956 kb on - strand, within Pf1N1B4_1479at 1700.956 kb on - strand, within Pf1N1B4_1479at 1700.956 kb on - strand, within Pf1N1B4_1479at 1700.956 kb on - strand, within Pf1N1B4_1479at 1701.396 kb on + strand, within Pf1N1B4_1479at 1701.397 kb on - strand, within Pf1N1B4_1479at 1701.397 kb on - strand, within Pf1N1B4_1479at 1701.600 kb on + strandat 1701.810 kb on + strandat 1701.810 kb on + strandat 1701.817 kb on + strandat 1701.852 kb on + strandat 1701.852 kb on + strandat 1701.852 kb on + strandat 1701.852 kb on + strandat 1701.852 kb on + strandat 1701.853 kb on - strandat 1701.853 kb on - strandat 1701.856 kb on + strandat 1701.856 kb on + strandat 1701.856 kb on + strandat 1701.856 kb on + strandat 1701.857 kb on - strandat 1701.857 kb on - strandat 1701.857 kb on - strandat 1701.857 kb on - strandat 1702.150 kb on + strand, within Pf1N1B4_1480at 1702.150 kb on + strand, within Pf1N1B4_1480at 1702.151 kb on - strand, within Pf1N1B4_1480at 1702.151 kb on - strand, within Pf1N1B4_1480at 1702.204 kb on + strand, within Pf1N1B4_1480at 1702.226 kb on - strand, within Pf1N1B4_1480at 1702.321 kb on + strand, within Pf1N1B4_1480at 1702.322 kb on - strand, within Pf1N1B4_1480at 1702.322 kb on - strand, within Pf1N1B4_1480at 1702.441 kb on + strand, within Pf1N1B4_1480at 1702.441 kb on + strand, within Pf1N1B4_1480at 1702.441 kb on + strand, within Pf1N1B4_1480at 1702.442 kb on - strand, within Pf1N1B4_1480at 1702.442 kb on - strandat 1702.442 kb on - strand, within Pf1N1B4_1480at 1702.442 kb on - strand, within Pf1N1B4_1480at 1702.442 kb on - strand, within Pf1N1B4_1480at 1702.456 kb on + strand, within Pf1N1B4_1480at 1702.468 kb on + strand, within Pf1N1B4_1480at 1702.468 kb on + strandat 1702.469 kb on - strandat 1702.527 kb on + strandat 1702.527 kb on + strandat 1702.527 kb on + strandat 1702.527 kb on + strandat 1702.527 kb on + strandat 1702.528 kb on - strandat 1702.528 kb on - strandat 1702.528 kb on - strandat 1702.528 kb on - strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.529 kb on + strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.531 kb on + strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.532 kb on - strandat 1702.598 kb on - strandat 1702.598 kb on - strandat 1702.618 kb on + strandat 1702.757 kb on + strand, within Pf1N1B4_1481at 1702.834 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.314 kb on + strand, within Pf1N1B4_1481at 1703.315 kb on - strandat 1703.345 kb on - strand, within Pf1N1B4_1481at 1703.345 kb on - strand, within Pf1N1B4_1481at 1703.446 kb on + strandat 1703.446 kb on + strandat 1703.447 kb on - strandat 1703.481 kb on + strandat 1703.481 kb on + strandat 1703.481 kb on + strandat 1703.482 kb on - strandat 1703.482 kb on - strandat 1703.482 kb on - strandat 1703.488 kb on + strandat 1703.489 kb on - strandat 1703.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.004 vol%
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1,700,893 - Pf1N1B4_1479 0.71 +1.2
1,700,893 - Pf1N1B4_1479 0.71 -0.7
1,700,955 + Pf1N1B4_1479 0.73 -0.4
1,700,956 - Pf1N1B4_1479 0.73 -2.3
1,700,956 - Pf1N1B4_1479 0.73 +1.1
1,700,956 - Pf1N1B4_1479 0.73 +0.7
1,700,956 - Pf1N1B4_1479 0.73 -0.4
1,701,396 + Pf1N1B4_1479 0.90 +0.2
1,701,397 - Pf1N1B4_1479 0.90 -0.4
1,701,397 - Pf1N1B4_1479 0.90 -0.6
1,701,600 + +0.6
1,701,810 + -0.5
1,701,810 + +1.9
1,701,817 + +0.6
1,701,852 + -0.7
1,701,852 + -0.7
1,701,852 + -0.8
1,701,852 + -0.4
1,701,852 + +1.7
1,701,853 - -2.3
1,701,853 - +0.5
1,701,856 + -1.3
1,701,856 + +0.9
1,701,856 + -0.6
1,701,856 + -0.1
1,701,857 - -0.7
1,701,857 - +0.4
1,701,857 - -1.7
1,701,857 - -2.7
1,702,150 + Pf1N1B4_1480 0.41 -0.9
1,702,150 + Pf1N1B4_1480 0.41 +0.9
1,702,151 - Pf1N1B4_1480 0.41 -1.9
1,702,151 - Pf1N1B4_1480 0.41 -1.6
1,702,204 + Pf1N1B4_1480 0.49 -0.3
1,702,226 - Pf1N1B4_1480 0.52 -0.3
1,702,321 + Pf1N1B4_1480 0.67 -0.3
1,702,322 - Pf1N1B4_1480 0.67 -0.7
1,702,322 - Pf1N1B4_1480 0.67 -1.4
1,702,441 + Pf1N1B4_1480 0.86 -1.4
1,702,441 + Pf1N1B4_1480 0.86 +0.0
1,702,441 + Pf1N1B4_1480 0.86 -1.4
1,702,442 - Pf1N1B4_1480 0.86 -0.1
1,702,442 - +0.3
1,702,442 - Pf1N1B4_1480 0.86 -1.9
1,702,442 - Pf1N1B4_1480 0.86 +1.5
1,702,442 - Pf1N1B4_1480 0.86 -0.1
1,702,456 + Pf1N1B4_1480 0.88 -0.1
1,702,468 + Pf1N1B4_1480 0.90 -0.6
1,702,468 + -0.7
1,702,469 - -1.4
1,702,527 + +0.0
1,702,527 + +0.3
1,702,527 + -0.9
1,702,527 + -0.0
1,702,527 + -0.1
1,702,528 - -2.1
1,702,528 - -0.5
1,702,528 - -0.1
1,702,528 - +0.2
1,702,529 + +0.2
1,702,529 + +1.6
1,702,529 + +0.5
1,702,529 + -0.3
1,702,529 + +0.9
1,702,529 + +1.0
1,702,529 + -0.1
1,702,529 + +0.4
1,702,529 + -1.3
1,702,530 - -1.1
1,702,530 - +0.9
1,702,530 - +1.6
1,702,530 - -0.1
1,702,530 - +0.1
1,702,530 - -0.4
1,702,530 - -1.7
1,702,530 - +1.1
1,702,530 - -1.4
1,702,530 - +0.2
1,702,530 - +0.2
1,702,530 - +0.2
1,702,530 - +1.4
1,702,530 - -0.1
1,702,530 - -1.7
1,702,530 - -0.4
1,702,531 + -0.1
1,702,531 + +0.4
1,702,531 + -0.1
1,702,531 + -0.1
1,702,531 + -0.1
1,702,531 + -0.7
1,702,531 + -1.6
1,702,531 + -0.1
1,702,531 + +1.9
1,702,531 + +0.1
1,702,531 + -1.7
1,702,531 + -0.7
1,702,531 + +0.5
1,702,531 + +0.2
1,702,531 + +0.5
1,702,531 + +0.7
1,702,531 + -0.2
1,702,531 + -2.1
1,702,532 - -2.9
1,702,532 - +0.3
1,702,532 - -1.8
1,702,532 - +0.0
1,702,532 - +0.3
1,702,532 - +0.4
1,702,532 - -0.2
1,702,532 - +0.2
1,702,532 - +0.3
1,702,532 - +1.1
1,702,532 - -0.7
1,702,532 - -0.2
1,702,532 - +0.2
1,702,532 - -0.4
1,702,598 - +0.2
1,702,598 - -0.1
1,702,618 + +0.9
1,702,757 + Pf1N1B4_1481 0.17 +0.4
1,702,834 + Pf1N1B4_1481 0.26 -0.4
1,703,314 + Pf1N1B4_1481 0.83 +0.2
1,703,314 + Pf1N1B4_1481 0.83 +0.3
1,703,314 + Pf1N1B4_1481 0.83 -1.1
1,703,314 + Pf1N1B4_1481 0.83 +0.4
1,703,315 - +0.9
1,703,345 - Pf1N1B4_1481 0.87 -1.1
1,703,345 - Pf1N1B4_1481 0.87 -2.1
1,703,446 + -1.9
1,703,446 + -1.1
1,703,447 - +0.6
1,703,481 + +1.2
1,703,481 + +0.0
1,703,481 + +0.9
1,703,482 - -2.3
1,703,482 - -1.1
1,703,482 - +1.2
1,703,488 + -0.2
1,703,489 - -1.1
1,703,526 - -1.1

Or see this region's nucleotide sequence