Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04895 and MMP_RS04900 are separated by 88 nucleotides MMP_RS04900 and MMP_RS04905 are separated by 44 nucleotides
MMP_RS04895: MMP_RS04895 - AI-2E family transporter, at 930,301 to 931,311
_RS04895
MMP_RS04900: MMP_RS04900 - hypothetical protein, at 931,400 to 933,241
_RS04900
MMP_RS04905: MMP_RS04905 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 933,286 to 934,695
_RS04905
Position (kb) 931
932
933
934 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 930.466 kb on - strand, within MMP_RS04895 at 930.532 kb on - strand, within MMP_RS04895 at 930.566 kb on - strand, within MMP_RS04895 at 930.566 kb on - strand, within MMP_RS04895 at 930.567 kb on + strand, within MMP_RS04895 at 930.567 kb on + strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.586 kb on + strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.617 kb on + strand, within MMP_RS04895 at 930.648 kb on - strand, within MMP_RS04895 at 930.694 kb on - strand, within MMP_RS04895 at 930.705 kb on - strand, within MMP_RS04895 at 930.724 kb on - strand, within MMP_RS04895 at 930.725 kb on + strand, within MMP_RS04895 at 930.725 kb on + strand, within MMP_RS04895 at 930.743 kb on - strand, within MMP_RS04895 at 930.744 kb on + strand, within MMP_RS04895 at 930.744 kb on + strand, within MMP_RS04895 at 930.766 kb on + strand, within MMP_RS04895 at 930.788 kb on - strand, within MMP_RS04895 at 930.848 kb on - strand, within MMP_RS04895 at 930.848 kb on - strand, within MMP_RS04895 at 930.851 kb on - strand, within MMP_RS04895 at 930.851 kb on - strand, within MMP_RS04895 at 930.852 kb on + strand, within MMP_RS04895 at 930.852 kb on + strand, within MMP_RS04895 at 930.882 kb on - strand, within MMP_RS04895 at 930.921 kb on - strand, within MMP_RS04895 at 930.970 kb on - strand, within MMP_RS04895 at 931.000 kb on - strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.002 kb on - strand, within MMP_RS04895 at 931.004 kb on - strand, within MMP_RS04895 at 931.005 kb on + strand, within MMP_RS04895 at 931.005 kb on + strand, within MMP_RS04895 at 931.019 kb on + strand, within MMP_RS04895 at 931.057 kb on - strand, within MMP_RS04895 at 931.084 kb on - strand, within MMP_RS04895 at 931.099 kb on - strand, within MMP_RS04895 at 931.125 kb on - strand, within MMP_RS04895 at 931.133 kb on + strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.218 kb on - strand at 931.218 kb on - strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.221 kb on - strand at 931.221 kb on - strand at 931.222 kb on + strand at 931.242 kb on - strand at 931.249 kb on + strand at 931.249 kb on + strand at 931.285 kb on - strand at 931.293 kb on - strand at 931.294 kb on + strand at 931.333 kb on - strand at 931.343 kb on - strand at 931.344 kb on + strand at 931.344 kb on + strand at 931.345 kb on - strand at 931.346 kb on + strand at 931.351 kb on - strand at 931.352 kb on + strand at 931.362 kb on - strand at 931.362 kb on - strand at 931.363 kb on + strand at 931.363 kb on + strand at 931.368 kb on - strand at 931.368 kb on - strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.373 kb on + strand at 931.373 kb on + strand at 931.397 kb on - strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.398 kb on + strand at 931.399 kb on - strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.400 kb on + strand at 931.478 kb on + strand at 931.478 kb on + strand at 931.594 kb on - strand, within MMP_RS04900 at 931.648 kb on - strand, within MMP_RS04900 at 931.649 kb on + strand, within MMP_RS04900 at 931.649 kb on + strand, within MMP_RS04900 at 931.717 kb on + strand, within MMP_RS04900 at 931.963 kb on + strand, within MMP_RS04900 at 931.963 kb on + strand, within MMP_RS04900 at 932.048 kb on - strand, within MMP_RS04900 at 932.048 kb on - strand, within MMP_RS04900 at 932.048 kb on - strand, within MMP_RS04900 at 932.049 kb on + strand, within MMP_RS04900 at 932.049 kb on + strand, within MMP_RS04900 at 932.049 kb on + strand, within MMP_RS04900 at 932.061 kb on + strand, within MMP_RS04900 at 932.061 kb on + strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.062 kb on - strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.063 kb on + strand, within MMP_RS04900 at 932.083 kb on - strand, within MMP_RS04900 at 932.083 kb on - strand, within MMP_RS04900 at 932.083 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.095 kb on - strand, within MMP_RS04900 at 932.096 kb on + strand, within MMP_RS04900 at 932.096 kb on + strand, within MMP_RS04900 at 932.099 kb on - strand, within MMP_RS04900 at 932.100 kb on + strand, within MMP_RS04900 at 932.137 kb on - strand, within MMP_RS04900 at 932.150 kb on + strand, within MMP_RS04900 at 932.237 kb on - strand, within MMP_RS04900 at 932.276 kb on + strand, within MMP_RS04900 at 932.287 kb on - strand, within MMP_RS04900 at 932.287 kb on - strand, within MMP_RS04900 at 932.343 kb on - strand, within MMP_RS04900 at 932.396 kb on - strand, within MMP_RS04900 at 932.397 kb on + strand, within MMP_RS04900 at 932.397 kb on + strand, within MMP_RS04900 at 932.420 kb on + strand, within MMP_RS04900 at 932.503 kb on + strand, within MMP_RS04900 at 932.535 kb on - strand, within MMP_RS04900 at 932.536 kb on + strand, within MMP_RS04900 at 932.536 kb on + strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.571 kb on - strand, within MMP_RS04900 at 932.572 kb on + strand, within MMP_RS04900 at 932.590 kb on - strand, within MMP_RS04900 at 932.591 kb on + strand, within MMP_RS04900 at 932.591 kb on + strand, within MMP_RS04900 at 932.624 kb on + strand, within MMP_RS04900 at 932.659 kb on - strand, within MMP_RS04900 at 932.671 kb on - strand, within MMP_RS04900 at 932.671 kb on - strand, within MMP_RS04900 at 932.671 kb on - strand, within MMP_RS04900 at 932.672 kb on + strand, within MMP_RS04900 at 932.717 kb on + strand, within MMP_RS04900 at 932.717 kb on + strand, within MMP_RS04900 at 932.717 kb on + strand, within MMP_RS04900 at 932.790 kb on + strand, within MMP_RS04900 at 932.821 kb on + strand, within MMP_RS04900 at 932.846 kb on - strand, within MMP_RS04900 at 932.918 kb on + strand, within MMP_RS04900 at 932.937 kb on - strand, within MMP_RS04900 at 932.937 kb on - strand, within MMP_RS04900 at 932.938 kb on + strand, within MMP_RS04900 at 932.938 kb on + strand, within MMP_RS04900 at 932.938 kb on + strand, within MMP_RS04900 at 932.941 kb on - strand, within MMP_RS04900 at 932.941 kb on - strand, within MMP_RS04900 at 932.942 kb on + strand, within MMP_RS04900 at 932.942 kb on + strand, within MMP_RS04900 at 932.951 kb on + strand, within MMP_RS04900 at 932.971 kb on + strand, within MMP_RS04900 at 932.985 kb on - strand, within MMP_RS04900 at 933.004 kb on - strand, within MMP_RS04900 at 933.010 kb on + strand, within MMP_RS04900 at 933.023 kb on + strand, within MMP_RS04900 at 933.102 kb on - strand at 933.176 kb on - strand at 933.177 kb on + strand at 933.179 kb on + strand at 933.179 kb on + strand at 933.180 kb on - strand at 933.181 kb on + strand at 933.239 kb on - strand at 933.249 kb on + strand at 933.280 kb on - strand at 933.528 kb on - strand at 933.779 kb on + strand at 933.923 kb on - strand at 934.138 kb on - strand at 934.138 kb on - strand at 934.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 remove 930,466 - MMP_RS04895 0.16 -0.5 930,532 - MMP_RS04895 0.23 -0.5 930,566 - MMP_RS04895 0.26 -1.1 930,566 - MMP_RS04895 0.26 -0.5 930,567 + MMP_RS04895 0.26 -0.2 930,567 + MMP_RS04895 0.26 -0.9 930,585 - MMP_RS04895 0.28 -0.6 930,585 - MMP_RS04895 0.28 -0.8 930,585 - MMP_RS04895 0.28 -0.0 930,586 + MMP_RS04895 0.28 -0.4 930,587 - MMP_RS04895 0.28 -0.3 930,587 - MMP_RS04895 0.28 -0.6 930,587 - MMP_RS04895 0.28 +0.5 930,587 - MMP_RS04895 0.28 -0.6 930,587 - MMP_RS04895 0.28 -0.9 930,588 + MMP_RS04895 0.28 -1.1 930,588 + MMP_RS04895 0.28 -1.1 930,588 + MMP_RS04895 0.28 -0.6 930,588 + MMP_RS04895 0.28 -0.0 930,588 + MMP_RS04895 0.28 -0.4 930,588 + MMP_RS04895 0.28 +0.7 930,590 + MMP_RS04895 0.29 +0.1 930,590 + MMP_RS04895 0.29 +0.2 930,590 + MMP_RS04895 0.29 -0.5 930,617 + MMP_RS04895 0.31 -1.4 930,648 - MMP_RS04895 0.34 +0.1 930,694 - MMP_RS04895 0.39 -0.5 930,705 - MMP_RS04895 0.40 -0.5 930,724 - MMP_RS04895 0.42 -0.8 930,725 + MMP_RS04895 0.42 -0.8 930,725 + MMP_RS04895 0.42 -0.4 930,743 - MMP_RS04895 0.44 -0.8 930,744 + MMP_RS04895 0.44 -1.6 930,744 + MMP_RS04895 0.44 -1.9 930,766 + MMP_RS04895 0.46 -0.1 930,788 - MMP_RS04895 0.48 -0.7 930,848 - MMP_RS04895 0.54 +0.7 930,848 - MMP_RS04895 0.54 +0.4 930,851 - MMP_RS04895 0.54 -0.7 930,851 - MMP_RS04895 0.54 -0.2 930,852 + MMP_RS04895 0.55 +0.8 930,852 + MMP_RS04895 0.55 -0.3 930,882 - MMP_RS04895 0.57 -1.0 930,921 - MMP_RS04895 0.61 -0.5 930,970 - MMP_RS04895 0.66 -1.3 931,000 - MMP_RS04895 0.69 -1.0 931,001 + MMP_RS04895 0.69 -1.0 931,001 + MMP_RS04895 0.69 -0.8 931,001 + MMP_RS04895 0.69 -0.6 931,001 + MMP_RS04895 0.69 -0.0 931,001 + MMP_RS04895 0.69 -1.0 931,002 - MMP_RS04895 0.69 +0.9 931,004 - MMP_RS04895 0.70 -0.9 931,005 + MMP_RS04895 0.70 -0.2 931,005 + MMP_RS04895 0.70 -0.7 931,019 + MMP_RS04895 0.71 -1.4 931,057 - MMP_RS04895 0.75 -0.4 931,084 - MMP_RS04895 0.77 +0.5 931,099 - MMP_RS04895 0.79 -0.9 931,125 - MMP_RS04895 0.82 -1.0 931,133 + MMP_RS04895 0.82 -0.5 931,191 - MMP_RS04895 0.88 -0.9 931,191 - MMP_RS04895 0.88 -1.1 931,191 - MMP_RS04895 0.88 -0.4 931,191 - MMP_RS04895 0.88 -0.7 931,191 - MMP_RS04895 0.88 -1.0 931,192 + MMP_RS04895 0.88 -0.5 931,192 + MMP_RS04895 0.88 -0.3 931,192 + MMP_RS04895 0.88 -1.0 931,193 - MMP_RS04895 0.88 -0.2 931,193 - MMP_RS04895 0.88 -0.4 931,193 - MMP_RS04895 0.88 -1.3 931,194 + MMP_RS04895 0.88 -0.7 931,194 + MMP_RS04895 0.88 -0.8 931,194 + MMP_RS04895 0.88 -0.6 931,194 + MMP_RS04895 0.88 -0.7 931,218 - -0.4 931,218 - -1.5 931,219 + +0.1 931,219 + -0.8 931,219 + -0.9 931,219 + -0.9 931,221 - +0.4 931,221 - -0.4 931,222 + -0.8 931,242 - -1.2 931,249 + -0.8 931,249 + -0.8 931,285 - -1.3 931,293 - +0.3 931,294 + -0.8 931,333 - -0.1 931,343 - -0.4 931,344 + -1.0 931,344 + +0.2 931,345 - -1.5 931,346 + -1.4 931,351 - -0.1 931,352 + -0.4 931,362 - -1.0 931,362 - -1.9 931,363 + -0.2 931,363 + -0.9 931,368 - -1.1 931,368 - -0.7 931,372 - -1.1 931,372 - -0.7 931,373 + -0.4 931,373 + -0.6 931,397 - -2.4 931,398 + -2.2 931,398 + -2.6 931,398 + -2.0 931,398 + -2.4 931,398 + -3.9 931,399 - -2.5 931,400 + -3.1 931,400 + -1.7 931,400 + -2.5 931,400 + -2.9 931,400 + -2.9 931,478 + -2.3 931,478 + -2.7 931,594 - MMP_RS04900 0.11 -2.3 931,648 - MMP_RS04900 0.13 -1.6 931,649 + MMP_RS04900 0.14 -2.0 931,649 + MMP_RS04900 0.14 -4.1 931,717 + MMP_RS04900 0.17 -3.3 931,963 + MMP_RS04900 0.31 -3.3 931,963 + MMP_RS04900 0.31 -2.1 932,048 - MMP_RS04900 0.35 -3.0 932,048 - MMP_RS04900 0.35 -2.5 932,048 - MMP_RS04900 0.35 -2.8 932,049 + MMP_RS04900 0.35 -2.1 932,049 + MMP_RS04900 0.35 -0.4 932,049 + MMP_RS04900 0.35 -2.5 932,061 + MMP_RS04900 0.36 -2.7 932,061 + MMP_RS04900 0.36 -2.2 932,062 - MMP_RS04900 0.36 -2.4 932,062 - MMP_RS04900 0.36 -0.8 932,062 - MMP_RS04900 0.36 -3.6 932,062 - MMP_RS04900 0.36 -2.8 932,062 - MMP_RS04900 0.36 -3.2 932,063 + MMP_RS04900 0.36 -2.1 932,063 + MMP_RS04900 0.36 -0.5 932,063 + MMP_RS04900 0.36 -3.0 932,063 + MMP_RS04900 0.36 -2.7 932,083 - MMP_RS04900 0.37 -2.4 932,083 - MMP_RS04900 0.37 -2.1 932,083 - MMP_RS04900 0.37 -2.0 932,095 - MMP_RS04900 0.38 -2.6 932,095 - MMP_RS04900 0.38 -2.5 932,095 - MMP_RS04900 0.38 -1.8 932,095 - MMP_RS04900 0.38 -2.6 932,095 - MMP_RS04900 0.38 -2.4 932,096 + MMP_RS04900 0.38 -1.3 932,096 + MMP_RS04900 0.38 -2.2 932,099 - MMP_RS04900 0.38 -2.2 932,100 + MMP_RS04900 0.38 -2.7 932,137 - MMP_RS04900 0.40 -3.3 932,150 + MMP_RS04900 0.41 -0.8 932,237 - MMP_RS04900 0.45 -2.3 932,276 + MMP_RS04900 0.48 -3.2 932,287 - MMP_RS04900 0.48 -2.6 932,287 - MMP_RS04900 0.48 -2.3 932,343 - MMP_RS04900 0.51 -2.4 932,396 - MMP_RS04900 0.54 -2.8 932,397 + MMP_RS04900 0.54 -2.9 932,397 + MMP_RS04900 0.54 -3.0 932,420 + MMP_RS04900 0.55 -2.8 932,503 + MMP_RS04900 0.60 -0.4 932,535 - MMP_RS04900 0.62 -0.4 932,536 + MMP_RS04900 0.62 -2.4 932,536 + MMP_RS04900 0.62 -2.5 932,571 - MMP_RS04900 0.64 -5.4 932,571 - MMP_RS04900 0.64 -3.0 932,571 - MMP_RS04900 0.64 -2.5 932,571 - MMP_RS04900 0.64 -1.8 932,572 + MMP_RS04900 0.64 -2.1 932,590 - MMP_RS04900 0.65 -2.4 932,591 + MMP_RS04900 0.65 -1.8 932,591 + MMP_RS04900 0.65 -2.4 932,624 + MMP_RS04900 0.66 -2.1 932,659 - MMP_RS04900 0.68 -2.1 932,671 - MMP_RS04900 0.69 -2.7 932,671 - MMP_RS04900 0.69 -2.4 932,671 - MMP_RS04900 0.69 -1.7 932,672 + MMP_RS04900 0.69 -2.1 932,717 + MMP_RS04900 0.71 -2.1 932,717 + MMP_RS04900 0.71 -1.9 932,717 + MMP_RS04900 0.71 -0.5 932,790 + MMP_RS04900 0.75 -2.3 932,821 + MMP_RS04900 0.77 -2.0 932,846 - MMP_RS04900 0.79 -1.4 932,918 + MMP_RS04900 0.82 -2.5 932,937 - MMP_RS04900 0.83 -1.8 932,937 - MMP_RS04900 0.83 -2.7 932,938 + MMP_RS04900 0.83 -2.4 932,938 + MMP_RS04900 0.83 -2.2 932,938 + MMP_RS04900 0.83 -3.1 932,941 - MMP_RS04900 0.84 -2.4 932,941 - MMP_RS04900 0.84 -1.0 932,942 + MMP_RS04900 0.84 -1.7 932,942 + MMP_RS04900 0.84 -1.9 932,951 + MMP_RS04900 0.84 -1.6 932,971 + MMP_RS04900 0.85 -2.3 932,985 - MMP_RS04900 0.86 -2.2 933,004 - MMP_RS04900 0.87 -2.1 933,010 + MMP_RS04900 0.87 -1.9 933,023 + MMP_RS04900 0.88 -2.6 933,102 - -1.1 933,176 - -2.3 933,177 + -2.0 933,179 + -3.1 933,179 + -1.9 933,180 - -1.6 933,181 + -2.1 933,239 - +0.0 933,249 + -0.0 933,280 - +1.7 933,528 - -1.4 933,779 + -3.0 933,923 - -3.0 934,138 - -2.2 934,138 - -1.0 934,174 - -2.4
Or see this region's nucleotide sequence