Experiment: Chloride stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03375 and HSERO_RS03380 are separated by 317 nucleotides HSERO_RS03380 and HSERO_RS03385 are separated by 69 nucleotides HSERO_RS03385 and HSERO_RS03390 are separated by 241 nucleotides
HSERO_RS03375: HSERO_RS03375 - translation factor Sua5, at 739,829 to 740,872
_RS03375
HSERO_RS03380: HSERO_RS03380 - membrane protein, at 741,190 to 741,927
_RS03380
HSERO_RS03385: HSERO_RS03385 - flavin reductase, at 741,997 to 742,506
_RS03385
HSERO_RS03390: HSERO_RS03390 - hypothetical protein, at 742,748 to 744,631
_RS03390
Position (kb) 741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 740.866 kb on + strand at 741.002 kb on - strand at 741.073 kb on + strand at 741.335 kb on + strand, within HSERO_RS03380 at 741.375 kb on + strand, within HSERO_RS03380 at 741.455 kb on + strand, within HSERO_RS03380 at 741.511 kb on + strand, within HSERO_RS03380 at 741.538 kb on - strand, within HSERO_RS03380 at 741.598 kb on - strand, within HSERO_RS03380 at 741.713 kb on + strand, within HSERO_RS03380 at 741.794 kb on - strand, within HSERO_RS03380 at 741.798 kb on + strand, within HSERO_RS03380 at 741.921 kb on + strand at 742.157 kb on - strand, within HSERO_RS03385 at 742.187 kb on - strand, within HSERO_RS03385 at 742.225 kb on + strand, within HSERO_RS03385 at 742.717 kb on + strand at 742.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride stress remove 740,866 + -0.9 741,002 - -1.9 741,073 + -0.1 741,335 + HSERO_RS03380 0.20 -0.1 741,375 + HSERO_RS03380 0.25 -0.0 741,455 + HSERO_RS03380 0.36 +0.1 741,511 + HSERO_RS03380 0.43 -0.4 741,538 - HSERO_RS03380 0.47 +0.2 741,598 - HSERO_RS03380 0.55 -0.3 741,713 + HSERO_RS03380 0.71 -0.8 741,794 - HSERO_RS03380 0.82 -0.0 741,798 + HSERO_RS03380 0.82 +3.7 741,921 + +0.7 742,157 - HSERO_RS03385 0.31 +0.1 742,187 - HSERO_RS03385 0.37 +0.1 742,225 + HSERO_RS03385 0.45 -0.7 742,717 + +0.3 742,787 + -0.6
Or see this region's nucleotide sequence