Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03541

Experiment: PYE with sodium fluoride 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with sodium fluoride 30 mM
3,697,123	-		CCNA_03539	0.20	+0.8
3,697,150	+		CCNA_03539	0.28	-1.4
3,697,159	-		CCNA_03539	0.30	-1.2
3,697,159	-		CCNA_03539	0.30	+0.4
3,697,176	+		CCNA_03539	0.35	-0.1
3,697,181	+		CCNA_03539	0.36	-1.4
3,697,181	+		CCNA_03539	0.36	-0.3
3,697,181	+		CCNA_03539	0.36	-0.3
3,697,181	+		CCNA_03539	0.36	-1.7
3,697,184	-		CCNA_03539	0.37	-1.0
3,697,189	-		CCNA_03539	0.39	-1.7
3,697,196	+		CCNA_03539	0.40	-1.6
3,697,199	-		CCNA_03539	0.41	-0.8
3,697,204	-		CCNA_03539	0.43	-1.1
3,697,275	+		CCNA_03539	0.62	+0.1
3,697,283	+		CCNA_03539	0.64	-2.6
3,697,286	-		CCNA_03539	0.65	+0.4
3,697,306	-		CCNA_03539	0.71	-1.9
3,697,312	+		CCNA_03539	0.72	-2.8
3,697,319	+		CCNA_03539	0.74	-0.7
3,697,331	-		CCNA_03539	0.78	-0.0
3,697,357	+		CCNA_03539	0.85	-0.6
3,697,365	-		CCNA_03539	0.87	-1.3
3,697,375	+				-1.6
3,697,383	-				+0.4
3,697,383	-				+2.9
3,697,424	+				+0.7
3,697,426	+				-0.1
3,697,457	+				-1.1
3,697,457	+				+0.1
3,697,457	+				+1.2
3,697,465	-				-2.1
3,697,465	-				-0.2
3,697,465	-				-0.6
3,697,476	-		CCNA_03540	0.10	-3.1
3,697,479	-		CCNA_03540	0.11	+0.0
3,697,481	+		CCNA_03540	0.11	-0.1
3,697,488	-		CCNA_03540	0.12	+2.6
3,697,489	-		CCNA_03540	0.12	+0.2
3,697,501	+		CCNA_03540	0.14	-0.9
3,697,501	+		CCNA_03540	0.14	-2.3
3,697,518	+		CCNA_03540	0.17	+1.4
3,697,582	-		CCNA_03540	0.26	-1.5
3,697,603	+		CCNA_03540	0.30	-2.3
3,697,611	-		CCNA_03540	0.31	-2.1
3,697,611	-		CCNA_03540	0.31	-0.9
3,697,611	-		CCNA_03540	0.31	-0.4
3,697,638	-		CCNA_03540	0.35	-1.4
3,697,638	-		CCNA_03540	0.35	-1.8
3,697,716	-		CCNA_03540	0.47	-0.9
3,697,722	-		CCNA_03540	0.48	-0.7
3,697,726	-		CCNA_03540	0.48	+0.9
3,697,747	+		CCNA_03540	0.52	-0.7
3,697,755	+		CCNA_03540	0.53	-0.6
3,697,755	-		CCNA_03540	0.53	-2.2
3,697,757	+		CCNA_03540	0.53	+0.8
3,697,757	+		CCNA_03540	0.53	-0.1
3,697,757	-		CCNA_03540	0.53	+1.5
3,697,765	-		CCNA_03540	0.54	-0.6
3,697,765	-		CCNA_03540	0.54	-1.4
3,697,784	+		CCNA_03540	0.57	+0.0
3,697,789	+		CCNA_03540	0.58	-0.9
3,697,809	-		CCNA_03540	0.61	-0.1
3,697,830	+		CCNA_03540	0.64	-0.4
3,697,836	+		CCNA_03540	0.65	-1.6
3,697,836	+		CCNA_03540	0.65	-1.6
3,697,836	+		CCNA_03540	0.65	-2.6
3,697,842	+		CCNA_03540	0.66	-0.6
3,697,844	-		CCNA_03540	0.66	-0.8
3,697,844	-		CCNA_03540	0.66	-2.4
3,697,856	+		CCNA_03540	0.68	-0.3
3,697,857	+		CCNA_03540	0.68	-1.5
3,697,871	-		CCNA_03540	0.70	-0.2
3,697,873	+		CCNA_03540	0.71	+0.6
3,697,883	-		CCNA_03540	0.72	-1.2
3,697,890	+		CCNA_03540	0.73	+1.6
3,697,948	+		CCNA_03540	0.82	-0.6
3,697,960	+		CCNA_03540	0.84	-0.6
3,697,960	+		CCNA_03540	0.84	-0.4
3,698,022	+				-1.5
3,698,022	+				+1.5
3,698,027	+				+0.1
3,698,030	-				+0.0
3,698,035	-				-1.1
3,698,087	+				+2.4
3,698,191	-		CCNA_03541	0.13	+0.9
3,698,216	+		CCNA_03541	0.16	+0.2
3,698,224	-		CCNA_03541	0.17	-0.1
3,698,226	+		CCNA_03541	0.17	-0.8
3,698,231	+		CCNA_03541	0.17	+0.4
3,698,231	+		CCNA_03541	0.17	-0.2
3,698,231	+		CCNA_03541	0.17	-0.2
3,698,234	-		CCNA_03541	0.18	-0.2
3,698,239	-		CCNA_03541	0.18	+0.4
3,698,240	-		CCNA_03541	0.18	-1.6
3,698,249	-		CCNA_03541	0.20	-0.5
3,698,265	+		CCNA_03541	0.21	-0.6
3,698,273	-		CCNA_03541	0.22	-0.4
3,698,312	+		CCNA_03541	0.27	-2.9
3,698,312	+		CCNA_03541	0.27	-0.8
3,698,312	+		CCNA_03541	0.27	+0.1
3,698,312	+		CCNA_03541	0.27	-2.4
3,698,312	+		CCNA_03541	0.27	+0.3
3,698,320	-		CCNA_03541	0.28	-3.1
3,698,320	-		CCNA_03541	0.28	+0.4
3,698,330	-		CCNA_03541	0.29	-1.7
3,698,355	+		CCNA_03541	0.32	-0.2
3,698,355	+		CCNA_03541	0.32	+0.5
3,698,355	+		CCNA_03541	0.32	-0.6
3,698,363	-		CCNA_03541	0.33	-0.4
3,698,363	-		CCNA_03541	0.33	-1.1
3,698,363	-		CCNA_03541	0.33	-1.6
3,698,373	-		CCNA_03541	0.34	-2.6
3,698,380	+		CCNA_03541	0.35	-0.8
3,698,383	-		CCNA_03541	0.35	-1.8
3,698,408	+		CCNA_03541	0.38	+1.1
3,698,408	+		CCNA_03541	0.38	-0.1
3,698,416	-		CCNA_03541	0.39	+0.0
3,698,420	+		CCNA_03541	0.40	+1.4
3,698,435	+		CCNA_03541	0.42	-0.1
3,698,451	-		CCNA_03541	0.44	-1.2
3,698,475	+		CCNA_03541	0.46	-1.5
3,698,475	+		CCNA_03541	0.46	+0.1
3,698,482	-		CCNA_03541	0.47	-2.1
3,698,482	-		CCNA_03541	0.47	-2.3
3,698,482	-		CCNA_03541	0.47	-2.0
3,698,483	-		CCNA_03541	0.47	-1.7
3,698,483	-		CCNA_03541	0.47	-2.3
3,698,483	-		CCNA_03541	0.47	-0.9
3,698,494	-		CCNA_03541	0.49	-1.7
3,698,527	-		CCNA_03541	0.53	-2.1
3,698,540	+		CCNA_03541	0.54	-1.3
3,698,567	+		CCNA_03541	0.57	-0.3
3,698,586	-		CCNA_03541	0.60	-0.6
3,698,587	-		CCNA_03541	0.60	-0.8
3,698,606	+		CCNA_03541	0.62	-0.2
3,698,606	+		CCNA_03541	0.62	+2.3
3,698,606	+		CCNA_03541	0.62	+0.9
3,698,614	-		CCNA_03541	0.63	-0.9
3,698,614	-		CCNA_03541	0.63	-1.2
3,698,614	-		CCNA_03541	0.63	-1.5
3,698,614	-		CCNA_03541	0.63	-1.6
3,698,628	-		CCNA_03541	0.65	+0.2
3,698,649	+		CCNA_03541	0.67	-0.6
3,698,660	+		CCNA_03541	0.68	-0.6
3,698,660	+		CCNA_03541	0.68	+0.1
3,698,660	+		CCNA_03541	0.68	+1.1
3,698,660	+		CCNA_03541	0.68	-2.6
3,698,660	+		CCNA_03541	0.68	+0.2
3,698,668	-		CCNA_03541	0.69	-0.5
3,698,675	+		CCNA_03541	0.70	-0.1
3,698,683	-		CCNA_03541	0.71	-0.5
3,698,687	+		CCNA_03541	0.72	+0.1
3,698,704	+		CCNA_03541	0.74	-2.3
3,698,706	-		CCNA_03541	0.74	+0.4
3,698,708	+		CCNA_03541	0.74	-0.5
3,698,716	-		CCNA_03541	0.75	-0.8
3,698,716	-		CCNA_03541	0.75	-1.7
3,698,771	+		CCNA_03541	0.82	+1.5
3,698,826	-		CCNA_03541	0.88	-1.8
3,698,844	+				-0.9
3,698,849	+				+2.4
3,698,857	+				+1.4
3,698,857	-				-0.3
3,698,900	+				+0.5
3,698,908	-				-1.1
3,698,926	-				-0.5
3,698,933	+				+1.4
3,698,933	+				-0.6
3,698,933	+				+0.3
3,698,941	-				+0.1
3,698,941	-				-1.4
3,698,941	-				-0.4
3,698,977	+		CCNA_03542	0.13	+0.5
3,699,043	+		CCNA_03542	0.24	-2.1
3,699,120	+		CCNA_03542	0.38	+1.1
3,699,122	-		CCNA_03542	0.38	-1.5
3,699,136	+		CCNA_03542	0.41	+0.0
3,699,136	+		CCNA_03542	0.41	-0.9
3,699,139	-		CCNA_03542	0.41	+0.5
3,699,251	+		CCNA_03542	0.61	+0.5
3,699,253	+		CCNA_03542	0.62	+0.8
3,699,259	-		CCNA_03542	0.63	-0.1
3,699,314	+		CCNA_03542	0.73	-0.6
3,699,314	+		CCNA_03542	0.73	-1.9
3,699,405	+		CCNA_03542	0.89	-0.3
3,699,405	+		CCNA_03542	0.89	-0.2
3,699,405	-		CCNA_03542	0.89	-0.5
3,699,413	-				-1.3
3,699,450	+				+0.5
3,699,450	+				-0.5
3,699,450	+				-0.3
3,699,450	+				-0.1
3,699,450	+				+0.0
3,699,450	+				+0.5
3,699,450	+				-1.4
3,699,450	+				-0.5
3,699,450	+				-0.6
3,699,450	+				-1.0
3,699,450	+				-1.0
3,699,450	+				-0.7
3,699,450	+				-0.3
3,699,450	+				+0.0
3,699,453	-				-2.0
3,699,458	-				+1.4
3,699,458	-				-1.4
3,699,458	-				-1.1
3,699,458	-				-1.8
3,699,458	-				+0.6
3,699,458	-				-1.4
3,699,479	+				-1.7
3,699,487	-				-2.1
3,699,529	+				-0.5
3,699,529	+				+0.2
3,699,532	-				-1.8
3,699,541	+				+0.2
3,699,541	+				-0.2
3,699,541	+				-0.3
3,699,541	+				-0.7
3,699,541	+				+0.0
3,699,551	+				-0.3
3,699,559	-				-0.7
3,699,566	+				-0.1
3,699,566	+				-0.6
3,699,566	+				+0.7
3,699,566	+				-0.1
3,699,566	+				-0.1
3,699,566	+				-0.1
3,699,566	+				+0.3
3,699,566	+				+0.1
3,699,566	+				-1.3
3,699,566	+				+0.5
3,699,566	+				-0.2
3,699,574	-				-1.7
3,699,574	-				-1.1
3,699,574	-				-1.6
3,699,574	-				+0.1
3,699,574	-				+1.4
3,699,574	-				-1.1
3,699,574	-				+0.4
3,699,574	-				-0.6
3,699,576	+				-2.4
3,699,579	-				+0.2
3,699,584	-				+0.3
3,699,586	+				-0.1
3,699,586	+				-0.5
3,699,635	+				+0.0
3,699,635	+				-0.9
3,699,635	+				-1.2
3,699,662	-				-1.2
3,699,677	+				+0.9
3,699,701	+				+2.4
3,699,715	+				-1.9
3,699,715	+				+0.3
3,699,741	+				+0.8
3,699,749	+				+0.1
3,699,779	-				-1.5
3,699,799	+				-0.9
3,699,799	+				-1.8
3,699,799	+				-0.6
3,699,799	+				-2.7
3,699,807	-				-1.0
3,699,807	-				-1.7
3,699,807	-				-0.8
3,699,807	-				+0.2
3,699,847	+				-1.1
3,699,855	-				-1.8
3,699,892	-				-1.0
3,699,894	+				-1.2
3,699,917	+				-0.6