Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07955

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS07950 and CA265_RS07955 are separated by 20 nucleotidesCA265_RS07955 and CA265_RS07960 are separated by 4 nucleotidesCA265_RS07960 and CA265_RS07965 are separated by 13 nucleotides CA265_RS07950: CA265_RS07950 - hypothetical protein, at 1,983,016 to 1,984,116 _RS07950 CA265_RS07955: CA265_RS07955 - asparagine synthase (glutamine-hydrolyzing), at 1,984,137 to 1,985,978 _RS07955 CA265_RS07960: CA265_RS07960 - hypothetical protein, at 1,985,983 to 1,986,873 _RS07960 CA265_RS07965: CA265_RS07965 - hypothetical protein, at 1,986,887 to 1,987,969 _RS07965 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1983.139 kb on - strand, within CA265_RS07950at 1983.269 kb on - strand, within CA265_RS07950at 1983.296 kb on - strand, within CA265_RS07950at 1983.296 kb on - strand, within CA265_RS07950at 1983.324 kb on + strand, within CA265_RS07950at 1983.328 kb on - strand, within CA265_RS07950at 1983.328 kb on - strand, within CA265_RS07950at 1983.523 kb on + strand, within CA265_RS07950at 1983.523 kb on + strand, within CA265_RS07950at 1983.524 kb on - strand, within CA265_RS07950at 1983.524 kb on - strand, within CA265_RS07950at 1983.525 kb on + strand, within CA265_RS07950at 1983.552 kb on - strand, within CA265_RS07950at 1983.624 kb on - strand, within CA265_RS07950at 1983.815 kb on + strand, within CA265_RS07950at 1983.833 kb on + strand, within CA265_RS07950at 1983.878 kb on + strand, within CA265_RS07950at 1983.889 kb on - strand, within CA265_RS07950at 1983.889 kb on - strand, within CA265_RS07950at 1983.889 kb on - strand, within CA265_RS07950at 1984.059 kb on - strandat 1984.059 kb on - strandat 1984.114 kb on + strandat 1984.114 kb on + strandat 1984.115 kb on - strandat 1984.115 kb on - strandat 1984.115 kb on - strandat 1984.147 kb on + strandat 1984.150 kb on - strandat 1984.269 kb on - strandat 1984.318 kb on - strandat 1984.319 kb on + strandat 1984.351 kb on + strand, within CA265_RS07955at 1984.360 kb on - strand, within CA265_RS07955at 1984.360 kb on - strand, within CA265_RS07955at 1984.370 kb on + strand, within CA265_RS07955at 1984.371 kb on - strand, within CA265_RS07955at 1984.429 kb on + strand, within CA265_RS07955at 1984.495 kb on + strand, within CA265_RS07955at 1984.529 kb on - strand, within CA265_RS07955at 1984.619 kb on - strand, within CA265_RS07955at 1984.619 kb on - strand, within CA265_RS07955at 1984.619 kb on - strand, within CA265_RS07955at 1984.619 kb on - strand, within CA265_RS07955at 1984.622 kb on + strand, within CA265_RS07955at 1984.659 kb on + strandat 1984.695 kb on - strand, within CA265_RS07955at 1984.698 kb on + strand, within CA265_RS07955at 1984.718 kb on - strand, within CA265_RS07955at 1984.718 kb on - strand, within CA265_RS07955at 1984.786 kb on + strand, within CA265_RS07955at 1984.844 kb on - strand, within CA265_RS07955at 1984.844 kb on - strand, within CA265_RS07955at 1984.919 kb on + strand, within CA265_RS07955at 1984.920 kb on - strand, within CA265_RS07955at 1984.933 kb on + strand, within CA265_RS07955at 1985.019 kb on + strand, within CA265_RS07955at 1985.058 kb on + strand, within CA265_RS07955at 1985.058 kb on + strand, within CA265_RS07955at 1985.060 kb on + strand, within CA265_RS07955at 1985.077 kb on - strand, within CA265_RS07955at 1985.096 kb on - strand, within CA265_RS07955at 1985.157 kb on - strand, within CA265_RS07955at 1985.263 kb on + strand, within CA265_RS07955at 1985.264 kb on - strand, within CA265_RS07955at 1985.387 kb on - strand, within CA265_RS07955at 1985.406 kb on - strand, within CA265_RS07955at 1985.448 kb on + strand, within CA265_RS07955at 1985.448 kb on + strand, within CA265_RS07955at 1985.448 kb on + strand, within CA265_RS07955at 1985.465 kb on + strand, within CA265_RS07955at 1985.465 kb on + strand, within CA265_RS07955at 1985.492 kb on - strand, within CA265_RS07955at 1985.546 kb on + strand, within CA265_RS07955at 1985.547 kb on - strand, within CA265_RS07955at 1985.547 kb on - strand, within CA265_RS07955at 1985.547 kb on - strand, within CA265_RS07955at 1985.652 kb on + strand, within CA265_RS07955at 1985.655 kb on - strand, within CA265_RS07955at 1985.689 kb on + strand, within CA265_RS07955at 1985.715 kb on - strand, within CA265_RS07955at 1985.715 kb on - strand, within CA265_RS07955at 1985.858 kb on + strandat 1985.870 kb on + strandat 1985.871 kb on - strandat 1985.871 kb on - strandat 1985.957 kb on + strandat 1985.958 kb on - strandat 1985.968 kb on + strandat 1986.127 kb on + strand, within CA265_RS07960at 1986.155 kb on + strand, within CA265_RS07960at 1986.216 kb on + strand, within CA265_RS07960at 1986.217 kb on - strand, within CA265_RS07960at 1986.288 kb on - strand, within CA265_RS07960at 1986.323 kb on + strand, within CA265_RS07960at 1986.324 kb on - strand, within CA265_RS07960at 1986.414 kb on - strand, within CA265_RS07960at 1986.455 kb on - strand, within CA265_RS07960at 1986.481 kb on - strand, within CA265_RS07960at 1986.488 kb on + strand, within CA265_RS07960at 1986.518 kb on - strand, within CA265_RS07960at 1986.544 kb on + strand, within CA265_RS07960at 1986.544 kb on + strand, within CA265_RS07960at 1986.545 kb on - strand, within CA265_RS07960at 1986.546 kb on + strandat 1986.557 kb on - strand, within CA265_RS07960at 1986.661 kb on + strand, within CA265_RS07960at 1986.726 kb on + strand, within CA265_RS07960at 1986.737 kb on + strand, within CA265_RS07960at 1986.754 kb on + strand, within CA265_RS07960at 1986.795 kb on + strandat 1986.800 kb on + strandat 1986.803 kb on + strandat 1986.804 kb on - strandat 1986.804 kb on - strandat 1986.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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1,983,139 - CA265_RS07950 0.11 +3.2
1,983,269 - CA265_RS07950 0.23 -0.4
1,983,296 - CA265_RS07950 0.25 +0.0
1,983,296 - CA265_RS07950 0.25 -1.4
1,983,324 + CA265_RS07950 0.28 -0.1
1,983,328 - CA265_RS07950 0.28 -0.3
1,983,328 - CA265_RS07950 0.28 -0.4
1,983,523 + CA265_RS07950 0.46 +1.0
1,983,523 + CA265_RS07950 0.46 -0.0
1,983,524 - CA265_RS07950 0.46 +0.7
1,983,524 - CA265_RS07950 0.46 +0.2
1,983,525 + CA265_RS07950 0.46 -0.2
1,983,552 - CA265_RS07950 0.49 -1.7
1,983,624 - CA265_RS07950 0.55 +0.0
1,983,815 + CA265_RS07950 0.73 +0.2
1,983,833 + CA265_RS07950 0.74 -0.4
1,983,878 + CA265_RS07950 0.78 +0.7
1,983,889 - CA265_RS07950 0.79 +0.6
1,983,889 - CA265_RS07950 0.79 -0.3
1,983,889 - CA265_RS07950 0.79 +0.3
1,984,059 - -0.4
1,984,059 - -0.2
1,984,114 + -0.9
1,984,114 + +0.6
1,984,115 - -0.7
1,984,115 - +0.7
1,984,115 - -0.1
1,984,147 + -1.2
1,984,150 - +0.2
1,984,269 - +1.6
1,984,318 - +0.6
1,984,319 + -0.9
1,984,351 + CA265_RS07955 0.12 -0.2
1,984,360 - CA265_RS07955 0.12 +0.4
1,984,360 - CA265_RS07955 0.12 -0.0
1,984,370 + CA265_RS07955 0.13 -0.5
1,984,371 - CA265_RS07955 0.13 -4.5
1,984,429 + CA265_RS07955 0.16 +0.2
1,984,495 + CA265_RS07955 0.19 -0.4
1,984,529 - CA265_RS07955 0.21 +0.6
1,984,619 - CA265_RS07955 0.26 +2.2
1,984,619 - CA265_RS07955 0.26 -0.1
1,984,619 - CA265_RS07955 0.26 +0.0
1,984,619 - CA265_RS07955 0.26 +0.2
1,984,622 + CA265_RS07955 0.26 -0.2
1,984,659 + -0.4
1,984,695 - CA265_RS07955 0.30 +0.4
1,984,698 + CA265_RS07955 0.30 -0.3
1,984,718 - CA265_RS07955 0.32 -0.6
1,984,718 - CA265_RS07955 0.32 -0.5
1,984,786 + CA265_RS07955 0.35 -0.7
1,984,844 - CA265_RS07955 0.38 -0.4
1,984,844 - CA265_RS07955 0.38 -1.3
1,984,919 + CA265_RS07955 0.42 -1.2
1,984,920 - CA265_RS07955 0.43 -0.5
1,984,933 + CA265_RS07955 0.43 +0.6
1,985,019 + CA265_RS07955 0.48 -0.5
1,985,058 + CA265_RS07955 0.50 +0.1
1,985,058 + CA265_RS07955 0.50 +0.4
1,985,060 + CA265_RS07955 0.50 +0.6
1,985,077 - CA265_RS07955 0.51 -0.1
1,985,096 - CA265_RS07955 0.52 +0.5
1,985,157 - CA265_RS07955 0.55 +0.2
1,985,263 + CA265_RS07955 0.61 +0.1
1,985,264 - CA265_RS07955 0.61 +1.2
1,985,387 - CA265_RS07955 0.68 -0.3
1,985,406 - CA265_RS07955 0.69 -0.4
1,985,448 + CA265_RS07955 0.71 -0.5
1,985,448 + CA265_RS07955 0.71 -0.1
1,985,448 + CA265_RS07955 0.71 +0.6
1,985,465 + CA265_RS07955 0.72 -1.1
1,985,465 + CA265_RS07955 0.72 +1.9
1,985,492 - CA265_RS07955 0.74 -0.2
1,985,546 + CA265_RS07955 0.76 +0.1
1,985,547 - CA265_RS07955 0.77 -0.2
1,985,547 - CA265_RS07955 0.77 -0.0
1,985,547 - CA265_RS07955 0.77 -0.6
1,985,652 + CA265_RS07955 0.82 -0.1
1,985,655 - CA265_RS07955 0.82 -0.4
1,985,689 + CA265_RS07955 0.84 -0.0
1,985,715 - CA265_RS07955 0.86 -0.1
1,985,715 - CA265_RS07955 0.86 +0.0
1,985,858 + -0.3
1,985,870 + +0.3
1,985,871 - +0.0
1,985,871 - +0.1
1,985,957 + -0.7
1,985,958 - -0.2
1,985,968 + -1.3
1,986,127 + CA265_RS07960 0.16 -0.1
1,986,155 + CA265_RS07960 0.19 +0.0
1,986,216 + CA265_RS07960 0.26 +0.1
1,986,217 - CA265_RS07960 0.26 -0.1
1,986,288 - CA265_RS07960 0.34 -1.1
1,986,323 + CA265_RS07960 0.38 +1.1
1,986,324 - CA265_RS07960 0.38 -0.3
1,986,414 - CA265_RS07960 0.48 +0.2
1,986,455 - CA265_RS07960 0.53 -0.2
1,986,481 - CA265_RS07960 0.56 +0.4
1,986,488 + CA265_RS07960 0.57 +0.2
1,986,518 - CA265_RS07960 0.60 +0.2
1,986,544 + CA265_RS07960 0.63 -0.3
1,986,544 + CA265_RS07960 0.63 -0.5
1,986,545 - CA265_RS07960 0.63 -1.0
1,986,546 + -1.2
1,986,557 - CA265_RS07960 0.64 -0.2
1,986,661 + CA265_RS07960 0.76 -0.3
1,986,726 + CA265_RS07960 0.83 -0.7
1,986,737 + CA265_RS07960 0.85 -0.9
1,986,754 + CA265_RS07960 0.87 -0.2
1,986,795 + -0.2
1,986,800 + -0.3
1,986,803 + +0.6
1,986,804 - +0.3
1,986,804 - +0.0
1,986,872 - -0.2

Or see this region's nucleotide sequence