Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00945

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00935 and CA265_RS00940 are separated by 563 nucleotidesCA265_RS00940 and CA265_RS00945 overlap by 38 nucleotidesCA265_RS00945 and CA265_RS00950 are separated by 26 nucleotides CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644 _RS00935 CA265_RS00940: CA265_RS00940 - hypothetical protein, at 235,208 to 235,444 _RS00940 CA265_RS00945: CA265_RS00945 - SusC/RagA family TonB-linked outer membrane protein, at 235,407 to 238,538 _RS00945 CA265_RS00950: CA265_RS00950 - RagB/SusD family nutrient uptake outer membrane protein, at 238,565 to 240,121 _RS00950 Position (kb) 235 236 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 234.431 kb on - strand, within CA265_RS00935at 234.470 kb on + strand, within CA265_RS00935at 234.559 kb on + strandat 234.559 kb on + strandat 234.560 kb on - strandat 234.560 kb on - strandat 234.642 kb on + strandat 234.660 kb on - strandat 234.660 kb on - strandat 234.660 kb on - strandat 234.815 kb on - strandat 234.888 kb on + strandat 235.045 kb on + strandat 235.124 kb on - strandat 235.134 kb on - strandat 235.135 kb on + strandat 235.135 kb on + strandat 235.135 kb on + strandat 235.237 kb on + strand, within CA265_RS00940at 235.238 kb on - strand, within CA265_RS00940at 235.258 kb on + strand, within CA265_RS00940at 235.302 kb on - strand, within CA265_RS00940at 235.303 kb on + strand, within CA265_RS00940at 235.304 kb on - strand, within CA265_RS00940at 235.391 kb on + strand, within CA265_RS00940at 235.452 kb on - strandat 235.567 kb on + strandat 235.676 kb on + strandat 235.723 kb on + strand, within CA265_RS00945at 235.916 kb on + strand, within CA265_RS00945at 235.947 kb on + strand, within CA265_RS00945at 235.954 kb on + strand, within CA265_RS00945at 236.071 kb on + strand, within CA265_RS00945at 236.073 kb on + strand, within CA265_RS00945at 236.148 kb on + strand, within CA265_RS00945at 236.148 kb on + strand, within CA265_RS00945at 236.148 kb on + strand, within CA265_RS00945at 236.149 kb on - strand, within CA265_RS00945at 236.215 kb on - strand, within CA265_RS00945at 236.295 kb on - strand, within CA265_RS00945at 236.295 kb on - strand, within CA265_RS00945at 236.326 kb on + strand, within CA265_RS00945at 236.326 kb on + strand, within CA265_RS00945at 236.361 kb on + strand, within CA265_RS00945at 236.362 kb on - strand, within CA265_RS00945at 236.362 kb on - strand, within CA265_RS00945at 236.363 kb on + strand, within CA265_RS00945at 236.445 kb on - strand, within CA265_RS00945at 236.502 kb on + strand, within CA265_RS00945at 236.502 kb on + strand, within CA265_RS00945at 236.627 kb on - strand, within CA265_RS00945at 236.703 kb on - strand, within CA265_RS00945at 236.799 kb on + strand, within CA265_RS00945at 236.800 kb on - strand, within CA265_RS00945at 236.811 kb on - strand, within CA265_RS00945at 236.816 kb on + strand, within CA265_RS00945at 236.817 kb on - strand, within CA265_RS00945at 236.860 kb on + strand, within CA265_RS00945at 236.868 kb on - strand, within CA265_RS00945at 236.897 kb on - strand, within CA265_RS00945at 236.899 kb on - strand, within CA265_RS00945at 236.905 kb on + strand, within CA265_RS00945at 236.973 kb on + strand, within CA265_RS00945at 236.982 kb on + strand, within CA265_RS00945at 237.022 kb on + strandat 237.022 kb on + strand, within CA265_RS00945at 237.062 kb on + strand, within CA265_RS00945at 237.192 kb on + strand, within CA265_RS00945at 237.193 kb on - strand, within CA265_RS00945at 237.201 kb on - strand, within CA265_RS00945at 237.201 kb on - strand, within CA265_RS00945at 237.211 kb on - strand, within CA265_RS00945at 237.211 kb on - strand, within CA265_RS00945at 237.267 kb on - strand, within CA265_RS00945at 237.359 kb on - strand, within CA265_RS00945at 237.429 kb on - strand, within CA265_RS00945at 237.453 kb on - strand, within CA265_RS00945at 237.580 kb on - strand, within CA265_RS00945at 237.600 kb on - strand, within CA265_RS00945at 237.600 kb on - strand, within CA265_RS00945at 237.620 kb on - strand, within CA265_RS00945at 237.644 kb on - strand, within CA265_RS00945at 237.644 kb on - strand, within CA265_RS00945at 237.744 kb on - strand, within CA265_RS00945at 237.765 kb on - strand, within CA265_RS00945at 237.765 kb on - strand, within CA265_RS00945at 237.847 kb on + strand, within CA265_RS00945at 237.927 kb on + strand, within CA265_RS00945at 237.928 kb on - strand, within CA265_RS00945at 237.928 kb on - strand, within CA265_RS00945at 237.928 kb on - strand, within CA265_RS00945at 237.931 kb on + strand, within CA265_RS00945at 237.931 kb on + strand, within CA265_RS00945at 237.932 kb on - strand, within CA265_RS00945at 237.932 kb on - strand, within CA265_RS00945at 237.932 kb on - strand, within CA265_RS00945at 237.975 kb on + strand, within CA265_RS00945at 237.976 kb on - strand, within CA265_RS00945at 237.976 kb on - strand, within CA265_RS00945at 238.004 kb on + strand, within CA265_RS00945at 238.004 kb on + strand, within CA265_RS00945at 238.110 kb on + strand, within CA265_RS00945at 238.117 kb on - strand, within CA265_RS00945at 238.122 kb on - strand, within CA265_RS00945at 238.168 kb on + strand, within CA265_RS00945at 238.168 kb on + strand, within CA265_RS00945at 238.168 kb on + strand, within CA265_RS00945at 238.169 kb on - strand, within CA265_RS00945at 238.193 kb on - strand, within CA265_RS00945at 238.193 kb on - strand, within CA265_RS00945at 238.264 kb on + strandat 238.264 kb on + strandat 238.264 kb on + strandat 238.265 kb on - strandat 238.369 kb on + strandat 238.423 kb on - strandat 238.517 kb on - strandat 238.536 kb on + strandat 238.537 kb on - strandat 238.572 kb on + strandat 238.636 kb on + strandat 238.809 kb on + strand, within CA265_RS00950at 238.888 kb on + strand, within CA265_RS00950at 238.917 kb on + strand, within CA265_RS00950at 238.917 kb on + strand, within CA265_RS00950at 238.917 kb on + strand, within CA265_RS00950at 238.918 kb on - strand, within CA265_RS00950at 239.080 kb on + strand, within CA265_RS00950at 239.090 kb on - strand, within CA265_RS00950at 239.246 kb on + strand, within CA265_RS00950at 239.250 kb on + strand, within CA265_RS00950at 239.250 kb on + strand, within CA265_RS00950at 239.251 kb on - strand, within CA265_RS00950at 239.251 kb on - strand, within CA265_RS00950at 239.251 kb on - strand, within CA265_RS00950at 239.251 kb on - strand, within CA265_RS00950at 239.272 kb on + strand, within CA265_RS00950at 239.273 kb on - strand, within CA265_RS00950at 239.288 kb on + strand, within CA265_RS00950at 239.288 kb on + strand, within CA265_RS00950at 239.331 kb on - strand, within CA265_RS00950at 239.352 kb on + strand, within CA265_RS00950at 239.404 kb on + strand, within CA265_RS00950

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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234,431 - CA265_RS00935 0.81 +1.2
234,470 + CA265_RS00935 0.85 -0.3
234,559 + +0.5
234,559 + +0.2
234,560 - +0.5
234,560 - -0.8
234,642 + -0.1
234,660 - -0.4
234,660 - -0.6
234,660 - +0.4
234,815 - +0.6
234,888 + -0.2
235,045 + -0.8
235,124 - +0.7
235,134 - -0.3
235,135 + +0.5
235,135 + -0.1
235,135 + +0.5
235,237 + CA265_RS00940 0.12 +0.1
235,238 - CA265_RS00940 0.13 -0.9
235,258 + CA265_RS00940 0.21 +0.1
235,302 - CA265_RS00940 0.40 -0.4
235,303 + CA265_RS00940 0.40 +0.2
235,304 - CA265_RS00940 0.41 +0.1
235,391 + CA265_RS00940 0.77 +0.4
235,452 - +0.1
235,567 + -0.3
235,676 + -0.8
235,723 + CA265_RS00945 0.10 +0.4
235,916 + CA265_RS00945 0.16 +1.2
235,947 + CA265_RS00945 0.17 +0.1
235,954 + CA265_RS00945 0.17 -0.0
236,071 + CA265_RS00945 0.21 +0.3
236,073 + CA265_RS00945 0.21 +0.7
236,148 + CA265_RS00945 0.24 +0.3
236,148 + CA265_RS00945 0.24 -0.2
236,148 + CA265_RS00945 0.24 -1.1
236,149 - CA265_RS00945 0.24 -1.0
236,215 - CA265_RS00945 0.26 -0.9
236,295 - CA265_RS00945 0.28 -0.0
236,295 - CA265_RS00945 0.28 +2.2
236,326 + CA265_RS00945 0.29 +0.6
236,326 + CA265_RS00945 0.29 -2.3
236,361 + CA265_RS00945 0.30 -1.0
236,362 - CA265_RS00945 0.30 +0.0
236,362 - CA265_RS00945 0.30 +0.6
236,363 + CA265_RS00945 0.31 +0.6
236,445 - CA265_RS00945 0.33 -0.5
236,502 + CA265_RS00945 0.35 +0.3
236,502 + CA265_RS00945 0.35 +0.1
236,627 - CA265_RS00945 0.39 +0.8
236,703 - CA265_RS00945 0.41 +0.7
236,799 + CA265_RS00945 0.44 +0.0
236,800 - CA265_RS00945 0.44 +0.5
236,811 - CA265_RS00945 0.45 +0.5
236,816 + CA265_RS00945 0.45 -0.1
236,817 - CA265_RS00945 0.45 -0.8
236,860 + CA265_RS00945 0.46 -0.6
236,868 - CA265_RS00945 0.47 -0.0
236,897 - CA265_RS00945 0.48 +0.2
236,899 - CA265_RS00945 0.48 +0.5
236,905 + CA265_RS00945 0.48 +0.8
236,973 + CA265_RS00945 0.50 -1.0
236,982 + CA265_RS00945 0.50 +0.1
237,022 + -0.3
237,022 + CA265_RS00945 0.52 +1.1
237,062 + CA265_RS00945 0.53 +0.4
237,192 + CA265_RS00945 0.57 -0.8
237,193 - CA265_RS00945 0.57 -0.4
237,201 - CA265_RS00945 0.57 -0.9
237,201 - CA265_RS00945 0.57 +0.0
237,211 - CA265_RS00945 0.58 -2.3
237,211 - CA265_RS00945 0.58 -0.6
237,267 - CA265_RS00945 0.59 -1.2
237,359 - CA265_RS00945 0.62 -0.1
237,429 - CA265_RS00945 0.65 +1.0
237,453 - CA265_RS00945 0.65 +0.4
237,580 - CA265_RS00945 0.69 -0.8
237,600 - CA265_RS00945 0.70 +0.0
237,600 - CA265_RS00945 0.70 -0.6
237,620 - CA265_RS00945 0.71 +0.3
237,644 - CA265_RS00945 0.71 -0.3
237,644 - CA265_RS00945 0.71 +0.2
237,744 - CA265_RS00945 0.75 -1.1
237,765 - CA265_RS00945 0.75 +0.0
237,765 - CA265_RS00945 0.75 +0.4
237,847 + CA265_RS00945 0.78 +0.5
237,927 + CA265_RS00945 0.80 -0.3
237,928 - CA265_RS00945 0.80 +0.2
237,928 - CA265_RS00945 0.80 -0.0
237,928 - CA265_RS00945 0.80 +0.4
237,931 + CA265_RS00945 0.81 +1.2
237,931 + CA265_RS00945 0.81 +0.4
237,932 - CA265_RS00945 0.81 +0.0
237,932 - CA265_RS00945 0.81 -0.3
237,932 - CA265_RS00945 0.81 -0.4
237,975 + CA265_RS00945 0.82 +0.3
237,976 - CA265_RS00945 0.82 -0.3
237,976 - CA265_RS00945 0.82 +0.1
238,004 + CA265_RS00945 0.83 +1.2
238,004 + CA265_RS00945 0.83 +0.8
238,110 + CA265_RS00945 0.86 +0.4
238,117 - CA265_RS00945 0.87 +1.5
238,122 - CA265_RS00945 0.87 -2.4
238,168 + CA265_RS00945 0.88 -0.4
238,168 + CA265_RS00945 0.88 +0.7
238,168 + CA265_RS00945 0.88 +1.0
238,169 - CA265_RS00945 0.88 +0.3
238,193 - CA265_RS00945 0.89 -0.2
238,193 - CA265_RS00945 0.89 +0.9
238,264 + -1.8
238,264 + +0.3
238,264 + +0.5
238,265 - +0.5
238,369 + +0.2
238,423 - +0.2
238,517 - -0.5
238,536 + +0.8
238,537 - +0.3
238,572 + +0.8
238,636 + -0.3
238,809 + CA265_RS00950 0.16 +0.7
238,888 + CA265_RS00950 0.21 +0.9
238,917 + CA265_RS00950 0.23 -0.6
238,917 + CA265_RS00950 0.23 +0.7
238,917 + CA265_RS00950 0.23 -0.2
238,918 - CA265_RS00950 0.23 +0.7
239,080 + CA265_RS00950 0.33 +0.1
239,090 - CA265_RS00950 0.34 +0.0
239,246 + CA265_RS00950 0.44 -2.1
239,250 + CA265_RS00950 0.44 -1.0
239,250 + CA265_RS00950 0.44 -0.4
239,251 - CA265_RS00950 0.44 -0.0
239,251 - CA265_RS00950 0.44 +0.0
239,251 - CA265_RS00950 0.44 +0.1
239,251 - CA265_RS00950 0.44 +1.3
239,272 + CA265_RS00950 0.45 +0.7
239,273 - CA265_RS00950 0.45 +0.6
239,288 + CA265_RS00950 0.46 -0.5
239,288 + CA265_RS00950 0.46 -1.5
239,331 - CA265_RS00950 0.49 -0.6
239,352 + CA265_RS00950 0.51 -1.2
239,404 + CA265_RS00950 0.54 -0.9

Or see this region's nucleotide sequence