Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20330

Experiment: soil sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20325 and ABZR87_RS20330 are separated by 18 nucleotidesABZR87_RS20330 and ABZR87_RS20335 are separated by 100 nucleotides ABZR87_RS20325: ABZR87_RS20325 - enolase C-terminal domain-like protein, at 948,233 to 949,642 _RS20325 ABZR87_RS20330: ABZR87_RS20330 - MFS transporter, at 949,661 to 951,013 _RS20330 ABZR87_RS20335: ABZR87_RS20335 - aldehyde dehydrogenase (NADP(+)), at 951,114 to 952,685 _RS20335 Position (kb) 949 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2at 948.801 kb on + strand, within ABZR87_RS20325at 948.801 kb on + strand, within ABZR87_RS20325at 948.802 kb on - strand, within ABZR87_RS20325at 948.978 kb on + strand, within ABZR87_RS20325at 948.979 kb on - strand, within ABZR87_RS20325at 949.116 kb on + strand, within ABZR87_RS20325at 949.116 kb on + strand, within ABZR87_RS20325at 949.117 kb on - strand, within ABZR87_RS20325at 949.117 kb on - strand, within ABZR87_RS20325at 949.117 kb on - strand, within ABZR87_RS20325at 949.125 kb on + strand, within ABZR87_RS20325at 949.125 kb on + strand, within ABZR87_RS20325at 949.384 kb on + strand, within ABZR87_RS20325at 949.384 kb on + strand, within ABZR87_RS20325at 949.385 kb on - strand, within ABZR87_RS20325at 949.385 kb on - strand, within ABZR87_RS20325at 949.385 kb on - strand, within ABZR87_RS20325at 949.513 kb on + strandat 949.644 kb on + strandat 949.644 kb on + strandat 949.645 kb on - strandat 949.662 kb on + strandat 949.711 kb on - strandat 949.711 kb on - strandat 949.746 kb on + strandat 949.747 kb on - strandat 949.788 kb on + strandat 949.788 kb on + strandat 949.788 kb on + strandat 949.789 kb on - strandat 949.971 kb on + strand, within ABZR87_RS20330at 949.972 kb on - strand, within ABZR87_RS20330at 949.972 kb on - strand, within ABZR87_RS20330at 949.972 kb on - strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on - strand, within ABZR87_RS20330at 950.220 kb on + strand, within ABZR87_RS20330at 950.220 kb on + strand, within ABZR87_RS20330at 950.221 kb on - strand, within ABZR87_RS20330at 950.232 kb on + strand, within ABZR87_RS20330at 950.233 kb on - strand, within ABZR87_RS20330at 950.274 kb on + strand, within ABZR87_RS20330at 950.320 kb on + strand, within ABZR87_RS20330at 950.320 kb on + strand, within ABZR87_RS20330at 950.321 kb on - strand, within ABZR87_RS20330at 950.321 kb on - strand, within ABZR87_RS20330at 950.349 kb on + strand, within ABZR87_RS20330at 950.350 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.674 kb on + strand, within ABZR87_RS20330at 950.736 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.796 kb on + strand, within ABZR87_RS20330at 950.797 kb on - strand, within ABZR87_RS20330at 950.823 kb on + strand, within ABZR87_RS20330at 950.901 kb on + strandat 950.901 kb on + strandat 950.901 kb on + strandat 950.901 kb on + strandat 950.920 kb on + strandat 950.921 kb on - strandat 951.097 kb on - strandat 951.205 kb on + strandat 951.559 kb on + strand, within ABZR87_RS20335at 951.559 kb on + strand, within ABZR87_RS20335at 951.560 kb on - strand, within ABZR87_RS20335at 951.560 kb on - strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.658 kb on + strand, within ABZR87_RS20335at 951.783 kb on - strand, within ABZR87_RS20335at 951.820 kb on + strand, within ABZR87_RS20335at 951.820 kb on + strand, within ABZR87_RS20335at 951.820 kb on + strand, within ABZR87_RS20335at 951.821 kb on - strand, within ABZR87_RS20335at 951.821 kb on - strand, within ABZR87_RS20335at 951.821 kb on - strand, within ABZR87_RS20335at 951.901 kb on + strand, within ABZR87_RS20335at 951.902 kb on - strand, within ABZR87_RS20335at 951.902 kb on - strand, within ABZR87_RS20335

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
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948,801 + ABZR87_RS20325 0.40 -0.0
948,801 + ABZR87_RS20325 0.40 +0.7
948,802 - ABZR87_RS20325 0.40 -0.8
948,978 + ABZR87_RS20325 0.53 -0.0
948,979 - ABZR87_RS20325 0.53 -0.8
949,116 + ABZR87_RS20325 0.63 -0.5
949,116 + ABZR87_RS20325 0.63 +0.9
949,117 - ABZR87_RS20325 0.63 +0.4
949,117 - ABZR87_RS20325 0.63 +0.5
949,117 - ABZR87_RS20325 0.63 -0.2
949,125 + ABZR87_RS20325 0.63 +1.8
949,125 + ABZR87_RS20325 0.63 -2.2
949,384 + ABZR87_RS20325 0.82 -0.8
949,384 + ABZR87_RS20325 0.82 -0.3
949,385 - ABZR87_RS20325 0.82 +0.1
949,385 - ABZR87_RS20325 0.82 -1.0
949,385 - ABZR87_RS20325 0.82 -2.5
949,513 + +0.7
949,644 + +0.1
949,644 + +0.8
949,645 - +0.1
949,662 + +0.9
949,711 - +1.9
949,711 - -0.9
949,746 + +1.4
949,747 - +0.4
949,788 + -1.4
949,788 + +0.9
949,788 + +1.3
949,789 - -0.7
949,971 + ABZR87_RS20330 0.23 -0.1
949,972 - ABZR87_RS20330 0.23 +0.3
949,972 - ABZR87_RS20330 0.23 +0.4
949,972 - ABZR87_RS20330 0.23 -0.6
950,172 + ABZR87_RS20330 0.38 -0.4
950,172 + ABZR87_RS20330 0.38 +0.2
950,172 + ABZR87_RS20330 0.38 -0.8
950,172 + ABZR87_RS20330 0.38 -0.4
950,172 - ABZR87_RS20330 0.38 -0.2
950,220 + ABZR87_RS20330 0.41 +0.2
950,220 + ABZR87_RS20330 0.41 -0.4
950,221 - ABZR87_RS20330 0.41 +1.2
950,232 + ABZR87_RS20330 0.42 -0.7
950,233 - ABZR87_RS20330 0.42 -0.1
950,274 + ABZR87_RS20330 0.45 -0.1
950,320 + ABZR87_RS20330 0.49 -0.3
950,320 + ABZR87_RS20330 0.49 -0.5
950,321 - ABZR87_RS20330 0.49 +0.8
950,321 - ABZR87_RS20330 0.49 -0.3
950,349 + ABZR87_RS20330 0.51 -0.3
950,350 - ABZR87_RS20330 0.51 +0.8
950,450 - ABZR87_RS20330 0.58 +0.3
950,450 - ABZR87_RS20330 0.58 +0.0
950,450 - ABZR87_RS20330 0.58 +0.2
950,674 + ABZR87_RS20330 0.75 +0.3
950,736 + ABZR87_RS20330 0.79 -0.4
950,796 + ABZR87_RS20330 0.84 +0.9
950,796 + ABZR87_RS20330 0.84 +0.9
950,796 + ABZR87_RS20330 0.84 -0.1
950,796 + ABZR87_RS20330 0.84 +0.5
950,797 - ABZR87_RS20330 0.84 +0.4
950,823 + ABZR87_RS20330 0.86 -0.2
950,901 + -0.2
950,901 + +0.4
950,901 + +1.4
950,901 + +1.2
950,920 + +1.5
950,921 - +0.3
951,097 - +0.0
951,205 + +0.9
951,559 + ABZR87_RS20335 0.28 -0.2
951,559 + ABZR87_RS20335 0.28 +0.0
951,560 - ABZR87_RS20335 0.28 +0.1
951,560 - ABZR87_RS20335 0.28 +0.6
951,658 + ABZR87_RS20335 0.35 +1.2
951,658 + ABZR87_RS20335 0.35 -1.0
951,658 + ABZR87_RS20335 0.35 +1.0
951,658 + ABZR87_RS20335 0.35 -1.7
951,783 - ABZR87_RS20335 0.43 +1.0
951,820 + ABZR87_RS20335 0.45 -0.1
951,820 + ABZR87_RS20335 0.45 +1.4
951,820 + ABZR87_RS20335 0.45 -1.1
951,821 - ABZR87_RS20335 0.45 -0.6
951,821 - ABZR87_RS20335 0.45 +0.7
951,821 - ABZR87_RS20335 0.45 +1.1
951,901 + ABZR87_RS20335 0.50 +0.7
951,902 - ABZR87_RS20335 0.50 -0.9
951,902 - ABZR87_RS20335 0.50 +0.4

Or see this region's nucleotide sequence