Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18560

Experiment: soil sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18555 and ABZR87_RS18560 are separated by 95 nucleotidesABZR87_RS18560 and ABZR87_RS18565 are separated by 124 nucleotidesABZR87_RS18565 and ABZR87_RS18570 are separated by 83 nucleotides ABZR87_RS18555: ABZR87_RS18555 - AraC family transcriptional regulator, at 518,264 to 519,163 _RS18555 ABZR87_RS18560: ABZR87_RS18560 - NmrA family NAD(P)-binding protein, at 519,259 to 520,149 _RS18560 ABZR87_RS18565: ABZR87_RS18565 - hypothetical protein, at 520,274 to 521,059 _RS18565 ABZR87_RS18570: ABZR87_RS18570 - hypothetical protein, at 521,143 to 521,697 _RS18570 Position (kb) 519 520 521Strain fitness (log2 ratio) -1 0 1 2at 518.382 kb on - strand, within ABZR87_RS18555at 518.451 kb on + strand, within ABZR87_RS18555at 518.583 kb on + strand, within ABZR87_RS18555at 518.583 kb on + strand, within ABZR87_RS18555at 518.717 kb on + strand, within ABZR87_RS18555at 518.718 kb on - strand, within ABZR87_RS18555at 518.718 kb on - strand, within ABZR87_RS18555at 518.841 kb on - strand, within ABZR87_RS18555at 518.960 kb on + strand, within ABZR87_RS18555at 518.960 kb on + strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 519.161 kb on + strandat 519.950 kb on + strand, within ABZR87_RS18560at 520.027 kb on + strand, within ABZR87_RS18560at 520.028 kb on - strand, within ABZR87_RS18560at 520.164 kb on + strandat 520.187 kb on + strandat 520.188 kb on - strandat 520.217 kb on - strandat 520.244 kb on + strandat 520.244 kb on + strandat 520.244 kb on + strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.373 kb on + strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.376 kb on - strand, within ABZR87_RS18565at 520.426 kb on + strand, within ABZR87_RS18565at 520.426 kb on + strand, within ABZR87_RS18565at 520.512 kb on - strand, within ABZR87_RS18565at 520.544 kb on + strand, within ABZR87_RS18565at 520.545 kb on - strand, within ABZR87_RS18565at 520.545 kb on - strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.581 kb on - strand, within ABZR87_RS18565at 520.710 kb on + strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.843 kb on + strand, within ABZR87_RS18565at 520.878 kb on - strand, within ABZR87_RS18565at 520.878 kb on - strand, within ABZR87_RS18565at 520.878 kb on - strand, within ABZR87_RS18565at 520.939 kb on - strand, within ABZR87_RS18565at 521.087 kb on + strandat 521.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
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518,382 - ABZR87_RS18555 0.13 -1.2
518,451 + ABZR87_RS18555 0.21 -0.6
518,583 + ABZR87_RS18555 0.35 -0.0
518,583 + ABZR87_RS18555 0.35 +0.2
518,717 + ABZR87_RS18555 0.50 +0.6
518,718 - ABZR87_RS18555 0.50 +0.0
518,718 - ABZR87_RS18555 0.50 +0.0
518,841 - ABZR87_RS18555 0.64 +0.0
518,960 + ABZR87_RS18555 0.77 +0.2
518,960 + ABZR87_RS18555 0.77 -1.1
518,961 - ABZR87_RS18555 0.77 -0.5
518,961 - ABZR87_RS18555 0.77 +1.0
518,961 - ABZR87_RS18555 0.77 +0.5
519,161 + -0.0
519,950 + ABZR87_RS18560 0.78 -0.5
520,027 + ABZR87_RS18560 0.86 -1.5
520,028 - ABZR87_RS18560 0.86 -0.8
520,164 + -0.4
520,187 + -0.7
520,188 - -0.3
520,217 - +0.1
520,244 + -0.1
520,244 + +0.2
520,244 + -0.1
520,245 - -0.4
520,245 - +0.0
520,245 - +0.6
520,245 - -0.8
520,245 - -0.1
520,245 - -0.0
520,245 - -0.7
520,373 + ABZR87_RS18565 0.13 -0.3
520,374 - ABZR87_RS18565 0.13 +0.1
520,374 - ABZR87_RS18565 0.13 -0.2
520,374 - ABZR87_RS18565 0.13 -0.2
520,374 - ABZR87_RS18565 0.13 -0.3
520,376 - ABZR87_RS18565 0.13 -0.4
520,426 + ABZR87_RS18565 0.19 -0.2
520,426 + ABZR87_RS18565 0.19 -0.5
520,512 - ABZR87_RS18565 0.30 -0.2
520,544 + ABZR87_RS18565 0.34 -0.0
520,545 - ABZR87_RS18565 0.34 -0.1
520,545 - ABZR87_RS18565 0.34 +1.0
520,580 + ABZR87_RS18565 0.39 +0.4
520,580 + ABZR87_RS18565 0.39 +0.8
520,580 + ABZR87_RS18565 0.39 -0.6
520,580 + ABZR87_RS18565 0.39 +0.8
520,580 + ABZR87_RS18565 0.39 -1.1
520,580 + ABZR87_RS18565 0.39 -0.8
520,581 - ABZR87_RS18565 0.39 +0.2
520,710 + ABZR87_RS18565 0.55 -0.0
520,728 - ABZR87_RS18565 0.58 -0.5
520,728 - ABZR87_RS18565 0.58 +0.2
520,728 - ABZR87_RS18565 0.58 -0.1
520,728 - ABZR87_RS18565 0.58 -0.1
520,728 - ABZR87_RS18565 0.58 -0.4
520,843 + ABZR87_RS18565 0.72 -0.7
520,878 - ABZR87_RS18565 0.77 +2.1
520,878 - ABZR87_RS18565 0.77 +0.3
520,878 - ABZR87_RS18565 0.77 +0.4
520,939 - ABZR87_RS18565 0.85 -0.6
521,087 + +1.2
521,087 + +0.5

Or see this region's nucleotide sequence