Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17810 and ABZR87_RS17815 overlap by 17 nucleotides ABZR87_RS17815 and ABZR87_RS17820 overlap by 4 nucleotides ABZR87_RS17820 and ABZR87_RS17825 overlap by 4 nucleotides
ABZR87_RS17810: ABZR87_RS17810 - acyl-CoA desaturase, at 355,005 to 356,096
_RS17810
ABZR87_RS17815: ABZR87_RS17815 - sterol desaturase family protein, at 356,080 to 357,213
_RS17815
ABZR87_RS17820: ABZR87_RS17820 - phosphatase PAP2 family protein, at 357,210 to 357,833
_RS17820
ABZR87_RS17825: ABZR87_RS17825 - F390 synthetase-related protein, at 357,830 to 359,140
_RS17825
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 355.081 kb on + strand at 355.113 kb on + strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.114 kb on - strand at 355.148 kb on + strand, within ABZR87_RS17810 at 355.148 kb on + strand, within ABZR87_RS17810 at 355.149 kb on - strand, within ABZR87_RS17810 at 355.149 kb on - strand, within ABZR87_RS17810 at 355.150 kb on + strand, within ABZR87_RS17810 at 355.151 kb on - strand, within ABZR87_RS17810 at 355.151 kb on - strand, within ABZR87_RS17810 at 355.151 kb on - strand, within ABZR87_RS17810 at 355.202 kb on - strand, within ABZR87_RS17810 at 355.297 kb on + strand, within ABZR87_RS17810 at 355.297 kb on + strand, within ABZR87_RS17810 at 355.298 kb on - strand, within ABZR87_RS17810 at 355.298 kb on - strand, within ABZR87_RS17810 at 355.376 kb on - strand, within ABZR87_RS17810 at 355.552 kb on + strand, within ABZR87_RS17810 at 355.552 kb on + strand, within ABZR87_RS17810 at 355.552 kb on + strand, within ABZR87_RS17810 at 355.553 kb on - strand, within ABZR87_RS17810 at 355.553 kb on - strand, within ABZR87_RS17810 at 355.553 kb on - strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.567 kb on + strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.568 kb on - strand, within ABZR87_RS17810 at 355.684 kb on + strand, within ABZR87_RS17810 at 355.684 kb on + strand, within ABZR87_RS17810 at 355.685 kb on - strand, within ABZR87_RS17810 at 355.685 kb on - strand, within ABZR87_RS17810 at 355.714 kb on + strand, within ABZR87_RS17810 at 355.714 kb on + strand, within ABZR87_RS17810 at 355.715 kb on - strand, within ABZR87_RS17810 at 355.739 kb on - strand, within ABZR87_RS17810 at 355.879 kb on + strand, within ABZR87_RS17810 at 355.879 kb on + strand, within ABZR87_RS17810 at 355.928 kb on - strand, within ABZR87_RS17810 at 355.928 kb on - strand, within ABZR87_RS17810 at 355.928 kb on - strand, within ABZR87_RS17810 at 356.345 kb on + strand, within ABZR87_RS17815 at 356.346 kb on - strand, within ABZR87_RS17815 at 356.379 kb on - strand, within ABZR87_RS17815 at 356.539 kb on + strand, within ABZR87_RS17815 at 356.539 kb on + strand, within ABZR87_RS17815 at 356.540 kb on - strand, within ABZR87_RS17815 at 356.579 kb on + strand, within ABZR87_RS17815 at 356.580 kb on - strand, within ABZR87_RS17815 at 356.636 kb on + strand, within ABZR87_RS17815 at 356.636 kb on + strand, within ABZR87_RS17815 at 356.637 kb on - strand, within ABZR87_RS17815 at 356.637 kb on - strand, within ABZR87_RS17815 at 356.732 kb on + strand, within ABZR87_RS17815 at 356.732 kb on + strand, within ABZR87_RS17815 at 356.747 kb on + strand, within ABZR87_RS17815 at 356.747 kb on + strand, within ABZR87_RS17815 at 356.768 kb on - strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.030 kb on + strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.031 kb on - strand, within ABZR87_RS17815 at 357.032 kb on + strand, within ABZR87_RS17815 at 357.032 kb on + strand, within ABZR87_RS17815 at 357.032 kb on + strand, within ABZR87_RS17815 at 357.033 kb on - strand, within ABZR87_RS17815 at 357.033 kb on - strand, within ABZR87_RS17815 at 357.033 kb on - strand, within ABZR87_RS17815 at 357.034 kb on + strand, within ABZR87_RS17815 at 357.034 kb on + strand, within ABZR87_RS17815 at 357.035 kb on - strand, within ABZR87_RS17815 at 357.261 kb on + strand at 357.262 kb on - strand at 357.262 kb on - strand at 357.640 kb on + strand, within ABZR87_RS17820 at 357.640 kb on + strand, within ABZR87_RS17820 at 357.673 kb on + strand, within ABZR87_RS17820 at 357.674 kb on - strand, within ABZR87_RS17820 at 357.674 kb on - strand, within ABZR87_RS17820 at 357.674 kb on - strand, within ABZR87_RS17820 at 357.674 kb on - strand, within ABZR87_RS17820 at 357.696 kb on - strand, within ABZR87_RS17820 at 357.769 kb on + strand, within ABZR87_RS17820 at 357.769 kb on + strand, within ABZR87_RS17820 at 357.770 kb on - strand, within ABZR87_RS17820 at 357.770 kb on - strand, within ABZR87_RS17820 at 357.770 kb on - strand, within ABZR87_RS17820 at 357.803 kb on + strand at 357.804 kb on - strand at 358.053 kb on + strand, within ABZR87_RS17825 at 358.150 kb on + strand, within ABZR87_RS17825
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 355,081 + -0.2 355,113 + +0.2 355,114 - -0.4 355,114 - -0.8 355,114 - -0.2 355,114 - +0.0 355,148 + ABZR87_RS17810 0.13 -0.0 355,148 + ABZR87_RS17810 0.13 -0.7 355,149 - ABZR87_RS17810 0.13 -0.5 355,149 - ABZR87_RS17810 0.13 +0.7 355,150 + ABZR87_RS17810 0.13 -1.6 355,151 - ABZR87_RS17810 0.13 -0.2 355,151 - ABZR87_RS17810 0.13 -0.1 355,151 - ABZR87_RS17810 0.13 -0.7 355,202 - ABZR87_RS17810 0.18 -0.1 355,297 + ABZR87_RS17810 0.27 +0.5 355,297 + ABZR87_RS17810 0.27 -0.4 355,298 - ABZR87_RS17810 0.27 +3.9 355,298 - ABZR87_RS17810 0.27 -0.7 355,376 - ABZR87_RS17810 0.34 +0.5 355,552 + ABZR87_RS17810 0.50 +0.5 355,552 + ABZR87_RS17810 0.50 +0.3 355,552 + ABZR87_RS17810 0.50 +0.4 355,553 - ABZR87_RS17810 0.50 +0.7 355,553 - ABZR87_RS17810 0.50 +1.7 355,553 - ABZR87_RS17810 0.50 -0.3 355,567 + ABZR87_RS17810 0.51 +0.4 355,567 + ABZR87_RS17810 0.51 +0.0 355,567 + ABZR87_RS17810 0.51 +0.0 355,567 + ABZR87_RS17810 0.51 +0.3 355,568 - ABZR87_RS17810 0.52 +0.2 355,568 - ABZR87_RS17810 0.52 +0.3 355,568 - ABZR87_RS17810 0.52 +0.1 355,568 - ABZR87_RS17810 0.52 +0.8 355,684 + ABZR87_RS17810 0.62 +1.3 355,684 + ABZR87_RS17810 0.62 +0.2 355,685 - ABZR87_RS17810 0.62 +0.3 355,685 - ABZR87_RS17810 0.62 -0.0 355,714 + ABZR87_RS17810 0.65 +0.0 355,714 + ABZR87_RS17810 0.65 +1.2 355,715 - ABZR87_RS17810 0.65 -0.2 355,739 - ABZR87_RS17810 0.67 -0.4 355,879 + ABZR87_RS17810 0.80 -0.4 355,879 + ABZR87_RS17810 0.80 -0.3 355,928 - ABZR87_RS17810 0.85 +1.7 355,928 - ABZR87_RS17810 0.85 +0.6 355,928 - ABZR87_RS17810 0.85 -0.1 356,345 + ABZR87_RS17815 0.23 +1.7 356,346 - ABZR87_RS17815 0.23 -0.5 356,379 - ABZR87_RS17815 0.26 +1.0 356,539 + ABZR87_RS17815 0.40 +0.4 356,539 + ABZR87_RS17815 0.40 +0.0 356,540 - ABZR87_RS17815 0.41 +0.8 356,579 + ABZR87_RS17815 0.44 -0.0 356,580 - ABZR87_RS17815 0.44 +0.8 356,636 + ABZR87_RS17815 0.49 -0.3 356,636 + ABZR87_RS17815 0.49 +1.5 356,637 - ABZR87_RS17815 0.49 -0.1 356,637 - ABZR87_RS17815 0.49 -1.6 356,732 + ABZR87_RS17815 0.57 +0.3 356,732 + ABZR87_RS17815 0.57 +1.1 356,747 + ABZR87_RS17815 0.59 -0.4 356,747 + ABZR87_RS17815 0.59 -1.6 356,768 - ABZR87_RS17815 0.61 +1.4 357,030 + ABZR87_RS17815 0.84 +0.8 357,030 + ABZR87_RS17815 0.84 +1.0 357,030 + ABZR87_RS17815 0.84 -0.0 357,030 + ABZR87_RS17815 0.84 +0.3 357,031 - ABZR87_RS17815 0.84 -0.3 357,031 - ABZR87_RS17815 0.84 +1.1 357,031 - ABZR87_RS17815 0.84 +0.1 357,031 - ABZR87_RS17815 0.84 -1.2 357,031 - ABZR87_RS17815 0.84 +0.2 357,031 - ABZR87_RS17815 0.84 +0.3 357,031 - ABZR87_RS17815 0.84 +0.0 357,032 + ABZR87_RS17815 0.84 +0.4 357,032 + ABZR87_RS17815 0.84 -0.1 357,032 + ABZR87_RS17815 0.84 +0.8 357,033 - ABZR87_RS17815 0.84 -0.2 357,033 - ABZR87_RS17815 0.84 -1.4 357,033 - ABZR87_RS17815 0.84 -0.8 357,034 + ABZR87_RS17815 0.84 +0.3 357,034 + ABZR87_RS17815 0.84 -0.4 357,035 - ABZR87_RS17815 0.84 +0.8 357,261 + +0.5 357,262 - -0.0 357,262 - -0.2 357,640 + ABZR87_RS17820 0.69 +0.7 357,640 + ABZR87_RS17820 0.69 +1.2 357,673 + ABZR87_RS17820 0.74 -0.1 357,674 - ABZR87_RS17820 0.74 +0.9 357,674 - ABZR87_RS17820 0.74 +1.2 357,674 - ABZR87_RS17820 0.74 -0.6 357,674 - ABZR87_RS17820 0.74 +0.4 357,696 - ABZR87_RS17820 0.78 -1.1 357,769 + ABZR87_RS17820 0.90 -0.3 357,769 + ABZR87_RS17820 0.90 -0.6 357,770 - ABZR87_RS17820 0.90 -1.5 357,770 - ABZR87_RS17820 0.90 -2.1 357,770 - ABZR87_RS17820 0.90 -0.7 357,803 + +0.8 357,804 - -0.5 358,053 + ABZR87_RS17825 0.17 -0.6 358,150 + ABZR87_RS17825 0.24 +0.5
Or see this region's nucleotide sequence