Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10900 and ABZR87_RS10905 overlap by 4 nucleotides ABZR87_RS10905 and ABZR87_RS10910 overlap by 8 nucleotides ABZR87_RS10910 and ABZR87_RS10915 are separated by 49 nucleotides
ABZR87_RS10900: ABZR87_RS10900 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,308,065 to 2,309,216
_RS10900
ABZR87_RS10905: ABZR87_RS10905 - type IV pilus biogenesis/stability protein PilW, at 2,309,213 to 2,310,010
_RS10905
ABZR87_RS10910: ABZR87_RS10910 - RodZ family helix-turn-helix domain-containing protein, at 2,310,003 to 2,311,094
_RS10910
ABZR87_RS10915: ABZR87_RS10915 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,311,144 to 2,312,430
_RS10915
Position (kb)
2310
2311
2312 Strain fitness (log2 ratio)
-1
0
1 at 2309.378 kb on + strand, within ABZR87_RS10905 at 2309.459 kb on + strand, within ABZR87_RS10905 at 2309.480 kb on + strand, within ABZR87_RS10905 at 2309.480 kb on + strand, within ABZR87_RS10905 at 2309.480 kb on + strand, within ABZR87_RS10905 at 2309.570 kb on + strand, within ABZR87_RS10905 at 2309.570 kb on + strand, within ABZR87_RS10905 at 2309.570 kb on + strand, within ABZR87_RS10905 at 2309.747 kb on + strand, within ABZR87_RS10905 at 2309.747 kb on + strand, within ABZR87_RS10905 at 2309.747 kb on + strand, within ABZR87_RS10905 at 2309.795 kb on + strand, within ABZR87_RS10905 at 2309.795 kb on + strand, within ABZR87_RS10905 at 2309.798 kb on + strand, within ABZR87_RS10905 at 2309.798 kb on + strand, within ABZR87_RS10905 at 2309.798 kb on + strand, within ABZR87_RS10905 at 2309.813 kb on + strand, within ABZR87_RS10905 at 2309.813 kb on + strand, within ABZR87_RS10905 at 2310.022 kb on + strand at 2310.248 kb on + strand, within ABZR87_RS10910 at 2310.392 kb on + strand, within ABZR87_RS10910 at 2310.479 kb on + strand, within ABZR87_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 2,309,378 + ABZR87_RS10905 0.21 -1.2 2,309,459 + ABZR87_RS10905 0.31 +0.1 2,309,480 + ABZR87_RS10905 0.33 -0.2 2,309,480 + ABZR87_RS10905 0.33 -1.4 2,309,480 + ABZR87_RS10905 0.33 +1.1 2,309,570 + ABZR87_RS10905 0.45 -1.5 2,309,570 + ABZR87_RS10905 0.45 -0.6 2,309,570 + ABZR87_RS10905 0.45 -0.1 2,309,747 + ABZR87_RS10905 0.67 +0.2 2,309,747 + ABZR87_RS10905 0.67 -0.2 2,309,747 + ABZR87_RS10905 0.67 +0.1 2,309,795 + ABZR87_RS10905 0.73 +0.1 2,309,795 + ABZR87_RS10905 0.73 +0.4 2,309,798 + ABZR87_RS10905 0.73 -0.8 2,309,798 + ABZR87_RS10905 0.73 -1.6 2,309,798 + ABZR87_RS10905 0.73 +0.4 2,309,813 + ABZR87_RS10905 0.75 -0.7 2,309,813 + ABZR87_RS10905 0.75 +0.1 2,310,022 + -0.2 2,310,248 + ABZR87_RS10910 0.22 -1.1 2,310,392 + ABZR87_RS10910 0.36 -0.9 2,310,479 + ABZR87_RS10910 0.44 +0.2
Or see this region's nucleotide sequence