Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07450

Experiment: soil sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07445 and ABZR87_RS07450 are separated by 102 nucleotidesABZR87_RS07450 and ABZR87_RS07455 are separated by 1 nucleotidesABZR87_RS07455 and ABZR87_RS07460 overlap by 4 nucleotides ABZR87_RS07445: ABZR87_RS07445 - hypothetical protein, at 1,578,927 to 1,579,787 _RS07445 ABZR87_RS07450: ABZR87_RS07450 - dihydroneopterin triphosphate diphosphatase, at 1,579,890 to 1,580,375 _RS07450 ABZR87_RS07455: ABZR87_RS07455 - endonuclease/exonuclease/phosphatase family protein, at 1,580,377 to 1,581,123 _RS07455 ABZR87_RS07460: ABZR87_RS07460 - cardiolipin synthase ClsB, at 1,581,120 to 1,582,388 _RS07460 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1578.924 kb on + strandat 1578.924 kb on + strandat 1578.924 kb on + strandat 1578.925 kb on - strandat 1578.933 kb on + strandat 1578.933 kb on + strandat 1578.933 kb on + strandat 1578.933 kb on + strandat 1578.934 kb on - strandat 1578.934 kb on - strandat 1578.934 kb on - strandat 1578.934 kb on - strandat 1579.012 kb on + strandat 1579.012 kb on + strandat 1579.012 kb on + strandat 1579.012 kb on + strandat 1579.013 kb on - strand, within ABZR87_RS07445at 1579.013 kb on - strand, within ABZR87_RS07445at 1579.013 kb on - strand, within ABZR87_RS07445at 1579.150 kb on + strand, within ABZR87_RS07445at 1579.150 kb on + strand, within ABZR87_RS07445at 1579.306 kb on - strand, within ABZR87_RS07445at 1579.659 kb on + strand, within ABZR87_RS07445at 1579.659 kb on + strand, within ABZR87_RS07445at 1579.660 kb on - strand, within ABZR87_RS07445at 1579.660 kb on - strand, within ABZR87_RS07445at 1579.660 kb on - strand, within ABZR87_RS07445at 1579.660 kb on - strand, within ABZR87_RS07445at 1579.840 kb on + strandat 1579.841 kb on - strandat 1579.841 kb on - strandat 1579.845 kb on + strandat 1579.845 kb on + strandat 1579.846 kb on - strandat 1580.067 kb on - strand, within ABZR87_RS07450at 1580.116 kb on - strand, within ABZR87_RS07450at 1580.145 kb on + strand, within ABZR87_RS07450at 1580.146 kb on - strand, within ABZR87_RS07450at 1580.257 kb on - strand, within ABZR87_RS07450at 1580.257 kb on - strand, within ABZR87_RS07450at 1580.335 kb on - strandat 1580.401 kb on + strandat 1580.401 kb on + strandat 1580.401 kb on + strandat 1580.401 kb on + strandat 1580.402 kb on - strandat 1580.402 kb on - strandat 1580.557 kb on + strand, within ABZR87_RS07455at 1580.557 kb on + strand, within ABZR87_RS07455at 1580.558 kb on - strand, within ABZR87_RS07455at 1580.558 kb on - strand, within ABZR87_RS07455at 1580.572 kb on + strand, within ABZR87_RS07455at 1580.573 kb on - strand, within ABZR87_RS07455at 1580.605 kb on + strand, within ABZR87_RS07455at 1580.605 kb on + strand, within ABZR87_RS07455at 1580.606 kb on - strand, within ABZR87_RS07455at 1580.606 kb on - strand, within ABZR87_RS07455at 1580.623 kb on + strand, within ABZR87_RS07455at 1580.692 kb on - strand, within ABZR87_RS07455at 1580.991 kb on + strand, within ABZR87_RS07455at 1580.991 kb on + strand, within ABZR87_RS07455at 1580.992 kb on - strand, within ABZR87_RS07455at 1580.992 kb on - strand, within ABZR87_RS07455at 1580.992 kb on - strand, within ABZR87_RS07455at 1581.019 kb on + strand, within ABZR87_RS07455at 1581.019 kb on + strand, within ABZR87_RS07455at 1581.019 kb on + strand, within ABZR87_RS07455at 1581.019 kb on + strand, within ABZR87_RS07455at 1581.019 kb on + strand, within ABZR87_RS07455at 1581.019 kb on + strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.020 kb on - strand, within ABZR87_RS07455at 1581.279 kb on + strand, within ABZR87_RS07460at 1581.279 kb on + strand, within ABZR87_RS07460at 1581.279 kb on + strand, within ABZR87_RS07460at 1581.280 kb on - strand, within ABZR87_RS07460at 1581.280 kb on - strand, within ABZR87_RS07460at 1581.285 kb on + strand, within ABZR87_RS07460at 1581.286 kb on - strand, within ABZR87_RS07460at 1581.286 kb on - strand, within ABZR87_RS07460at 1581.286 kb on - strand, within ABZR87_RS07460at 1581.286 kb on - strand, within ABZR87_RS07460at 1581.286 kb on - strand, within ABZR87_RS07460

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
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1,578,924 + +0.7
1,578,924 + -0.9
1,578,924 + +0.9
1,578,925 - +1.8
1,578,933 + -0.1
1,578,933 + -1.0
1,578,933 + +0.4
1,578,933 + -0.7
1,578,934 - -3.2
1,578,934 - -0.1
1,578,934 - -1.8
1,578,934 - +0.1
1,579,012 + -0.1
1,579,012 + -1.6
1,579,012 + -0.3
1,579,012 + -0.9
1,579,013 - ABZR87_RS07445 0.10 -1.1
1,579,013 - ABZR87_RS07445 0.10 +0.4
1,579,013 - ABZR87_RS07445 0.10 -0.1
1,579,150 + ABZR87_RS07445 0.26 +0.6
1,579,150 + ABZR87_RS07445 0.26 +1.0
1,579,306 - ABZR87_RS07445 0.44 -0.8
1,579,659 + ABZR87_RS07445 0.85 -0.2
1,579,659 + ABZR87_RS07445 0.85 +1.2
1,579,660 - ABZR87_RS07445 0.85 -0.1
1,579,660 - ABZR87_RS07445 0.85 +0.3
1,579,660 - ABZR87_RS07445 0.85 -1.5
1,579,660 - ABZR87_RS07445 0.85 -0.9
1,579,840 + -0.0
1,579,841 - +0.4
1,579,841 - -1.0
1,579,845 + +0.9
1,579,845 + +0.2
1,579,846 - -0.9
1,580,067 - ABZR87_RS07450 0.36 -3.0
1,580,116 - ABZR87_RS07450 0.47 -1.4
1,580,145 + ABZR87_RS07450 0.52 -0.5
1,580,146 - ABZR87_RS07450 0.53 -1.1
1,580,257 - ABZR87_RS07450 0.76 -0.3
1,580,257 - ABZR87_RS07450 0.76 -0.9
1,580,335 - -0.3
1,580,401 + +1.1
1,580,401 + -0.7
1,580,401 + -1.3
1,580,401 + +1.0
1,580,402 - +0.1
1,580,402 - -1.6
1,580,557 + ABZR87_RS07455 0.24 -2.8
1,580,557 + ABZR87_RS07455 0.24 -0.5
1,580,558 - ABZR87_RS07455 0.24 -0.5
1,580,558 - ABZR87_RS07455 0.24 +0.7
1,580,572 + ABZR87_RS07455 0.26 -0.4
1,580,573 - ABZR87_RS07455 0.26 -2.7
1,580,605 + ABZR87_RS07455 0.31 -0.1
1,580,605 + ABZR87_RS07455 0.31 -1.4
1,580,606 - ABZR87_RS07455 0.31 +3.4
1,580,606 - ABZR87_RS07455 0.31 -0.5
1,580,623 + ABZR87_RS07455 0.33 +0.3
1,580,692 - ABZR87_RS07455 0.42 -0.1
1,580,991 + ABZR87_RS07455 0.82 -0.0
1,580,991 + ABZR87_RS07455 0.82 -0.0
1,580,992 - ABZR87_RS07455 0.82 +1.0
1,580,992 - ABZR87_RS07455 0.82 -0.2
1,580,992 - ABZR87_RS07455 0.82 -0.5
1,581,019 + ABZR87_RS07455 0.86 -0.3
1,581,019 + ABZR87_RS07455 0.86 +0.2
1,581,019 + ABZR87_RS07455 0.86 +0.3
1,581,019 + ABZR87_RS07455 0.86 -1.4
1,581,019 + ABZR87_RS07455 0.86 -0.3
1,581,019 + ABZR87_RS07455 0.86 -0.4
1,581,020 - ABZR87_RS07455 0.86 -0.3
1,581,020 - ABZR87_RS07455 0.86 -0.4
1,581,020 - ABZR87_RS07455 0.86 -0.2
1,581,020 - ABZR87_RS07455 0.86 -0.5
1,581,020 - ABZR87_RS07455 0.86 -0.2
1,581,020 - ABZR87_RS07455 0.86 -0.6
1,581,020 - ABZR87_RS07455 0.86 +0.8
1,581,279 + ABZR87_RS07460 0.13 -0.3
1,581,279 + ABZR87_RS07460 0.13 -0.3
1,581,279 + ABZR87_RS07460 0.13 -0.2
1,581,280 - ABZR87_RS07460 0.13 +0.7
1,581,280 - ABZR87_RS07460 0.13 -0.6
1,581,285 + ABZR87_RS07460 0.13 -1.9
1,581,286 - ABZR87_RS07460 0.13 -1.2
1,581,286 - ABZR87_RS07460 0.13 +0.1
1,581,286 - ABZR87_RS07460 0.13 -1.5
1,581,286 - ABZR87_RS07460 0.13 -0.6
1,581,286 - ABZR87_RS07460 0.13 -0.5

Or see this region's nucleotide sequence