Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04720

Experiment: soil sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04710 and ABZR87_RS04715 are separated by 20 nucleotidesABZR87_RS04715 and ABZR87_RS04720 are separated by 195 nucleotidesABZR87_RS04720 and ABZR87_RS04725 are separated by 42 nucleotidesABZR87_RS04725 and ABZR87_RS04730 are separated by 184 nucleotides ABZR87_RS04710: ABZR87_RS04710 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 982,942 to 983,613 _RS04710 ABZR87_RS04715: ABZR87_RS04715 - ABC transporter substrate-binding protein, at 983,634 to 984,398 _RS04715 ABZR87_RS04720: ABZR87_RS04720 - IclR family transcriptional regulator, at 984,594 to 985,391 _RS04720 ABZR87_RS04725: ABZR87_RS04725 - universal stress protein, at 985,434 to 985,868 _RS04725 ABZR87_RS04730: ABZR87_RS04730 - thioesterase family protein, at 986,053 to 986,496 _RS04730 Position (kb) 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 983.774 kb on - strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 984.007 kb on + strand, within ABZR87_RS04715at 984.007 kb on + strand, within ABZR87_RS04715at 984.007 kb on + strand, within ABZR87_RS04715at 984.008 kb on - strand, within ABZR87_RS04715at 984.008 kb on - strand, within ABZR87_RS04715at 984.055 kb on + strand, within ABZR87_RS04715at 984.055 kb on + strand, within ABZR87_RS04715at 984.056 kb on - strand, within ABZR87_RS04715at 984.056 kb on - strand, within ABZR87_RS04715at 984.056 kb on - strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.304 kb on + strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.305 kb on - strand, within ABZR87_RS04715at 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.465 kb on + strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.466 kb on - strandat 984.495 kb on + strandat 984.510 kb on + strandat 984.510 kb on + strandat 984.511 kb on - strandat 984.515 kb on - strandat 984.528 kb on - strandat 984.536 kb on + strandat 984.536 kb on + strandat 984.536 kb on + strandat 984.537 kb on - strandat 984.538 kb on + strandat 984.538 kb on + strandat 984.539 kb on - strandat 984.762 kb on + strand, within ABZR87_RS04720at 984.762 kb on + strand, within ABZR87_RS04720at 984.762 kb on + strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.763 kb on - strand, within ABZR87_RS04720at 984.784 kb on - strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.852 kb on + strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.853 kb on - strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.963 kb on + strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 984.964 kb on - strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.032 kb on + strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.033 kb on - strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.056 kb on + strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.057 kb on - strand, within ABZR87_RS04720at 985.188 kb on + strand, within ABZR87_RS04720at 985.189 kb on - strand, within ABZR87_RS04720at 985.250 kb on + strand, within ABZR87_RS04720at 985.251 kb on - strand, within ABZR87_RS04720at 985.251 kb on - strand, within ABZR87_RS04720at 985.251 kb on - strand, within ABZR87_RS04720at 985.693 kb on + strand, within ABZR87_RS04725at 985.694 kb on - strand, within ABZR87_RS04725at 985.715 kb on + strand, within ABZR87_RS04725at 985.831 kb on + strandat 985.832 kb on - strandat 985.854 kb on + strandat 985.855 kb on - strandat 985.855 kb on - strandat 985.855 kb on - strandat 985.855 kb on - strandat 985.929 kb on + strandat 985.930 kb on - strandat 985.930 kb on - strandat 985.956 kb on + strandat 985.957 kb on - strandat 985.968 kb on + strandat 985.968 kb on + strandat 985.968 kb on + strandat 985.968 kb on + strandat 985.968 kb on + strandat 985.969 kb on - strandat 985.969 kb on - strandat 985.969 kb on - strandat 985.969 kb on - strandat 985.969 kb on - strandat 985.969 kb on - strandat 985.969 kb on - strandat 986.161 kb on + strand, within ABZR87_RS04730at 986.161 kb on + strand, within ABZR87_RS04730at 986.161 kb on + strand, within ABZR87_RS04730at 986.161 kb on + strand, within ABZR87_RS04730at 986.162 kb on - strand, within ABZR87_RS04730at 986.162 kb on - strand, within ABZR87_RS04730at 986.387 kb on + strand, within ABZR87_RS04730at 986.387 kb on + strand, within ABZR87_RS04730

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
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983,774 - ABZR87_RS04715 0.18 -0.0
983,902 + ABZR87_RS04715 0.35 +0.3
983,902 + ABZR87_RS04715 0.35 -1.4
983,902 + ABZR87_RS04715 0.35 -0.6
983,902 + ABZR87_RS04715 0.35 -0.5
983,902 + ABZR87_RS04715 0.35 +0.7
983,903 - ABZR87_RS04715 0.35 +0.9
983,903 - ABZR87_RS04715 0.35 +0.0
983,903 - ABZR87_RS04715 0.35 +0.3
983,903 - ABZR87_RS04715 0.35 +0.1
983,903 - ABZR87_RS04715 0.35 -0.1
983,906 + ABZR87_RS04715 0.36 +0.1
983,906 + ABZR87_RS04715 0.36 +1.5
983,906 + ABZR87_RS04715 0.36 +0.8
983,906 + ABZR87_RS04715 0.36 +0.0
983,906 + ABZR87_RS04715 0.36 -1.4
983,906 + ABZR87_RS04715 0.36 +0.9
983,907 - ABZR87_RS04715 0.36 +0.1
983,907 - ABZR87_RS04715 0.36 -0.7
983,907 - ABZR87_RS04715 0.36 +0.3
983,907 - ABZR87_RS04715 0.36 +1.2
983,907 - ABZR87_RS04715 0.36 -0.5
984,007 + ABZR87_RS04715 0.49 +0.0
984,007 + ABZR87_RS04715 0.49 +1.4
984,007 + ABZR87_RS04715 0.49 +0.1
984,008 - ABZR87_RS04715 0.49 -0.1
984,008 - ABZR87_RS04715 0.49 -1.4
984,055 + ABZR87_RS04715 0.55 +0.7
984,055 + ABZR87_RS04715 0.55 -1.5
984,056 - ABZR87_RS04715 0.55 -0.9
984,056 - ABZR87_RS04715 0.55 +0.4
984,056 - ABZR87_RS04715 0.55 +0.1
984,304 + ABZR87_RS04715 0.88 -0.8
984,304 + ABZR87_RS04715 0.88 -0.7
984,304 + ABZR87_RS04715 0.88 -0.7
984,304 + ABZR87_RS04715 0.88 +0.4
984,304 + ABZR87_RS04715 0.88 -0.4
984,304 + ABZR87_RS04715 0.88 +1.7
984,304 + ABZR87_RS04715 0.88 -1.4
984,304 + ABZR87_RS04715 0.88 -0.2
984,304 + ABZR87_RS04715 0.88 -0.1
984,304 + ABZR87_RS04715 0.88 +0.3
984,305 - ABZR87_RS04715 0.88 +0.4
984,305 - ABZR87_RS04715 0.88 -0.4
984,305 - ABZR87_RS04715 0.88 -0.5
984,305 - ABZR87_RS04715 0.88 +1.0
984,305 - ABZR87_RS04715 0.88 +0.2
984,305 - ABZR87_RS04715 0.88 +0.0
984,305 - ABZR87_RS04715 0.88 -0.1
984,305 - ABZR87_RS04715 0.88 +0.5
984,305 - ABZR87_RS04715 0.88 -0.6
984,465 + -0.1
984,465 + +0.6
984,465 + +0.2
984,465 + +3.1
984,465 + -0.2
984,465 + +0.5
984,465 + +1.6
984,466 - -0.2
984,466 - -0.3
984,466 - -0.4
984,466 - -0.8
984,466 - -2.1
984,466 - -0.9
984,466 - -0.5
984,466 - -0.6
984,495 + -1.2
984,510 + +0.1
984,510 + +0.3
984,511 - -2.6
984,515 - +0.2
984,528 - -0.8
984,536 + -1.0
984,536 + +0.6
984,536 + +0.2
984,537 - -1.7
984,538 + -0.9
984,538 + -1.2
984,539 - -3.1
984,762 + ABZR87_RS04720 0.21 -0.2
984,762 + ABZR87_RS04720 0.21 -0.1
984,762 + ABZR87_RS04720 0.21 +0.4
984,763 - ABZR87_RS04720 0.21 -1.2
984,763 - ABZR87_RS04720 0.21 -1.2
984,763 - ABZR87_RS04720 0.21 -1.0
984,763 - ABZR87_RS04720 0.21 -1.2
984,784 - ABZR87_RS04720 0.24 -0.3
984,852 + ABZR87_RS04720 0.32 -0.6
984,852 + ABZR87_RS04720 0.32 -1.0
984,852 + ABZR87_RS04720 0.32 -1.2
984,852 + ABZR87_RS04720 0.32 -0.2
984,853 - ABZR87_RS04720 0.32 +0.2
984,853 - ABZR87_RS04720 0.32 -1.0
984,853 - ABZR87_RS04720 0.32 -0.5
984,853 - ABZR87_RS04720 0.32 -1.7
984,963 + ABZR87_RS04720 0.46 +0.3
984,963 + ABZR87_RS04720 0.46 -0.6
984,963 + ABZR87_RS04720 0.46 -2.5
984,963 + ABZR87_RS04720 0.46 -0.4
984,963 + ABZR87_RS04720 0.46 -0.8
984,964 - ABZR87_RS04720 0.46 -1.2
984,964 - ABZR87_RS04720 0.46 -1.2
984,964 - ABZR87_RS04720 0.46 -1.7
984,964 - ABZR87_RS04720 0.46 -0.6
984,964 - ABZR87_RS04720 0.46 -0.8
984,964 - ABZR87_RS04720 0.46 -2.2
985,032 + ABZR87_RS04720 0.55 -1.1
985,032 + ABZR87_RS04720 0.55 -0.7
985,032 + ABZR87_RS04720 0.55 -0.4
985,032 + ABZR87_RS04720 0.55 -0.4
985,032 + ABZR87_RS04720 0.55 +0.5
985,032 + ABZR87_RS04720 0.55 -1.5
985,032 + ABZR87_RS04720 0.55 -0.6
985,033 - ABZR87_RS04720 0.55 +1.9
985,033 - ABZR87_RS04720 0.55 +0.6
985,033 - ABZR87_RS04720 0.55 -1.0
985,033 - ABZR87_RS04720 0.55 -3.2
985,033 - ABZR87_RS04720 0.55 -0.5
985,033 - ABZR87_RS04720 0.55 -1.1
985,056 + ABZR87_RS04720 0.58 -2.3
985,056 + ABZR87_RS04720 0.58 +0.6
985,056 + ABZR87_RS04720 0.58 -1.6
985,056 + ABZR87_RS04720 0.58 -0.4
985,056 + ABZR87_RS04720 0.58 -0.4
985,056 + ABZR87_RS04720 0.58 -0.9
985,057 - ABZR87_RS04720 0.58 -1.2
985,057 - ABZR87_RS04720 0.58 -1.7
985,057 - ABZR87_RS04720 0.58 +1.3
985,057 - ABZR87_RS04720 0.58 -0.4
985,057 - ABZR87_RS04720 0.58 -2.7
985,057 - ABZR87_RS04720 0.58 -0.5
985,188 + ABZR87_RS04720 0.74 -0.6
985,189 - ABZR87_RS04720 0.75 -0.2
985,250 + ABZR87_RS04720 0.82 -0.1
985,251 - ABZR87_RS04720 0.82 -1.5
985,251 - ABZR87_RS04720 0.82 -3.0
985,251 - ABZR87_RS04720 0.82 -0.5
985,693 + ABZR87_RS04725 0.60 +1.3
985,694 - ABZR87_RS04725 0.60 +4.5
985,715 + ABZR87_RS04725 0.65 +0.0
985,831 + -0.0
985,832 - -0.3
985,854 + +1.5
985,855 - -0.8
985,855 - +0.3
985,855 - -0.4
985,855 - +1.0
985,929 + -1.5
985,930 - +0.1
985,930 - +0.1
985,956 + +0.2
985,957 - -1.3
985,968 + +0.0
985,968 + +2.0
985,968 + +1.3
985,968 + +0.6
985,968 + +0.7
985,969 - -0.5
985,969 - +0.8
985,969 - -0.9
985,969 - +0.7
985,969 - -1.0
985,969 - +1.0
985,969 - -0.0
986,161 + ABZR87_RS04730 0.24 -3.5
986,161 + ABZR87_RS04730 0.24 +0.9
986,161 + ABZR87_RS04730 0.24 -1.4
986,161 + ABZR87_RS04730 0.24 -0.1
986,162 - ABZR87_RS04730 0.25 +0.9
986,162 - ABZR87_RS04730 0.25 -0.3
986,387 + ABZR87_RS04730 0.75 -0.5
986,387 + ABZR87_RS04730 0.75 +0.2

Or see this region's nucleotide sequence