Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03910 and ABZR87_RS03915 are separated by 758 nucleotides ABZR87_RS03915 and ABZR87_RS03920 are separated by 273 nucleotides
ABZR87_RS03910: ABZR87_RS03910 - oxygen-independent coproporphyrinogen III oxidase, at 809,046 to 810,530
_RS03910
ABZR87_RS03915: ABZR87_RS03915 - UvrD-helicase domain-containing protein, at 811,289 to 813,421
_RS03915
ABZR87_RS03920: ABZR87_RS03920 - hypothetical protein, at 813,695 to 814,021
_RS03920
Position (kb) 811
812
813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.296 kb on - strand, within ABZR87_RS03910 at 810.296 kb on - strand, within ABZR87_RS03910 at 810.296 kb on - strand, within ABZR87_RS03910 at 810.358 kb on + strand, within ABZR87_RS03910 at 810.410 kb on + strand at 810.410 kb on + strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.412 kb on + strand at 810.412 kb on + strand at 810.429 kb on - strand at 810.429 kb on - strand at 810.541 kb on + strand at 810.541 kb on + strand at 810.542 kb on - strand at 810.542 kb on - strand at 810.553 kb on + strand at 810.554 kb on - strand at 810.554 kb on - strand at 810.554 kb on - strand at 810.563 kb on + strand at 810.563 kb on + strand at 810.954 kb on + strand at 810.954 kb on + strand at 810.954 kb on + strand at 811.417 kb on + strand at 811.417 kb on + strand at 811.418 kb on - strand at 811.418 kb on - strand at 811.418 kb on - strand at 811.418 kb on - strand at 811.419 kb on + strand at 811.419 kb on + strand at 811.420 kb on - strand at 811.420 kb on - strand at 811.420 kb on - strand at 811.480 kb on + strand at 811.480 kb on + strand at 811.481 kb on - strand at 811.481 kb on - strand at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.620 kb on + strand, within ABZR87_RS03915 at 811.620 kb on + strand, within ABZR87_RS03915 at 811.620 kb on + strand, within ABZR87_RS03915 at 811.736 kb on - strand, within ABZR87_RS03915 at 811.736 kb on - strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.899 kb on + strand, within ABZR87_RS03915 at 811.899 kb on + strand, within ABZR87_RS03915 at 811.899 kb on + strand, within ABZR87_RS03915 at 811.900 kb on - strand, within ABZR87_RS03915 at 811.900 kb on - strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.906 kb on - strand, within ABZR87_RS03915 at 811.906 kb on - strand, within ABZR87_RS03915 at 811.914 kb on + strand, within ABZR87_RS03915 at 811.915 kb on - strand, within ABZR87_RS03915 at 811.915 kb on - strand, within ABZR87_RS03915 at 812.202 kb on + strand, within ABZR87_RS03915 at 812.203 kb on - strand, within ABZR87_RS03915 at 812.262 kb on + strand, within ABZR87_RS03915 at 812.262 kb on + strand, within ABZR87_RS03915 at 812.262 kb on + strand, within ABZR87_RS03915 at 812.263 kb on - strand, within ABZR87_RS03915 at 812.263 kb on - strand, within ABZR87_RS03915 at 812.263 kb on - strand, within ABZR87_RS03915 at 812.322 kb on + strand, within ABZR87_RS03915 at 812.539 kb on - strand, within ABZR87_RS03915 at 812.539 kb on - strand, within ABZR87_RS03915 at 812.625 kb on + strand, within ABZR87_RS03915 at 812.625 kb on + strand, within ABZR87_RS03915 at 812.625 kb on + strand, within ABZR87_RS03915 at 812.626 kb on - strand, within ABZR87_RS03915 at 812.626 kb on - strand, within ABZR87_RS03915 at 812.626 kb on - strand, within ABZR87_RS03915 at 812.709 kb on + strand, within ABZR87_RS03915 at 812.710 kb on - strand, within ABZR87_RS03915 at 812.710 kb on - strand, within ABZR87_RS03915 at 812.733 kb on + strand, within ABZR87_RS03915 at 812.733 kb on + strand, within ABZR87_RS03915 at 812.733 kb on + strand, within ABZR87_RS03915 at 812.734 kb on - strand, within ABZR87_RS03915 at 812.734 kb on - strand, within ABZR87_RS03915 at 812.734 kb on - strand, within ABZR87_RS03915 at 812.751 kb on + strand, within ABZR87_RS03915 at 812.868 kb on + strand, within ABZR87_RS03915 at 812.868 kb on + strand, within ABZR87_RS03915 at 812.868 kb on + strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.911 kb on - strand, within ABZR87_RS03915 at 813.133 kb on + strand, within ABZR87_RS03915 at 813.133 kb on + strand, within ABZR87_RS03915 at 813.134 kb on - strand, within ABZR87_RS03915 at 813.134 kb on - strand, within ABZR87_RS03915 at 813.134 kb on - strand, within ABZR87_RS03915 at 813.366 kb on + strand at 813.367 kb on - strand at 813.367 kb on - strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.473 kb on - strand at 813.473 kb on - strand at 813.473 kb on - strand at 813.588 kb on - strand at 813.588 kb on - strand at 813.588 kb on - strand at 813.588 kb on - strand at 813.596 kb on + strand at 813.597 kb on - strand at 813.619 kb on + strand at 813.619 kb on + strand at 813.619 kb on + strand at 813.619 kb on + strand at 813.620 kb on - strand at 813.620 kb on - strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.020 kb on - strand at 814.020 kb on - strand at 814.128 kb on - strand at 814.128 kb on - strand at 814.128 kb on - strand at 814.128 kb on - strand at 814.293 kb on + strand at 814.293 kb on + strand at 814.413 kb on - strand at 814.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 810,295 + ABZR87_RS03910 0.84 -0.3 810,295 + ABZR87_RS03910 0.84 -0.2 810,295 + ABZR87_RS03910 0.84 +1.0 810,295 + ABZR87_RS03910 0.84 -1.0 810,296 - ABZR87_RS03910 0.84 -1.2 810,296 - ABZR87_RS03910 0.84 +0.9 810,296 - ABZR87_RS03910 0.84 +0.7 810,358 + ABZR87_RS03910 0.88 +0.2 810,410 + +1.3 810,410 + +0.8 810,411 - -0.9 810,411 - +1.3 810,411 - +1.1 810,411 - -0.9 810,411 - +0.1 810,411 - -3.2 810,411 - +0.5 810,412 + +1.4 810,412 + -0.8 810,429 - -0.4 810,429 - -1.5 810,541 + -1.0 810,541 + -1.5 810,542 - +0.4 810,542 - -0.4 810,553 + -1.0 810,554 - +0.2 810,554 - -0.9 810,554 - +0.2 810,563 + +0.2 810,563 + +0.2 810,954 + +2.1 810,954 + -0.5 810,954 + -0.8 811,417 + -2.0 811,417 + -0.2 811,418 - -1.4 811,418 - -0.0 811,418 - -0.6 811,418 - -1.0 811,419 + -2.1 811,419 + -1.8 811,420 - -0.7 811,420 - +1.5 811,420 - +0.7 811,480 + -1.7 811,480 + -2.4 811,481 - -1.7 811,481 - -2.3 811,515 + ABZR87_RS03915 0.11 -1.2 811,515 + ABZR87_RS03915 0.11 -0.9 811,515 + ABZR87_RS03915 0.11 -0.6 811,515 + ABZR87_RS03915 0.11 -0.8 811,515 + ABZR87_RS03915 0.11 -0.3 811,515 + ABZR87_RS03915 0.11 -0.3 811,515 + ABZR87_RS03915 0.11 +0.6 811,515 + ABZR87_RS03915 0.11 -2.3 811,515 + ABZR87_RS03915 0.11 -0.1 811,515 + ABZR87_RS03915 0.11 +0.2 811,515 + ABZR87_RS03915 0.11 -1.8 811,516 - ABZR87_RS03915 0.11 -1.2 811,516 - ABZR87_RS03915 0.11 -1.0 811,516 - ABZR87_RS03915 0.11 -0.3 811,516 - ABZR87_RS03915 0.11 +0.0 811,516 - ABZR87_RS03915 0.11 -0.6 811,516 - ABZR87_RS03915 0.11 -0.2 811,516 - ABZR87_RS03915 0.11 +1.0 811,516 - ABZR87_RS03915 0.11 -0.8 811,516 - ABZR87_RS03915 0.11 -1.4 811,516 - ABZR87_RS03915 0.11 -2.2 811,516 - ABZR87_RS03915 0.11 -0.5 811,516 - ABZR87_RS03915 0.11 +1.3 811,516 - ABZR87_RS03915 0.11 -0.5 811,516 - ABZR87_RS03915 0.11 -0.1 811,620 + ABZR87_RS03915 0.16 -0.9 811,620 + ABZR87_RS03915 0.16 -2.2 811,620 + ABZR87_RS03915 0.16 -1.2 811,736 - ABZR87_RS03915 0.21 +0.5 811,736 - ABZR87_RS03915 0.21 -2.1 811,890 + ABZR87_RS03915 0.28 +0.8 811,890 + ABZR87_RS03915 0.28 +0.2 811,890 + ABZR87_RS03915 0.28 -0.3 811,890 + ABZR87_RS03915 0.28 -1.6 811,899 + ABZR87_RS03915 0.29 +0.5 811,899 + ABZR87_RS03915 0.29 +0.4 811,899 + ABZR87_RS03915 0.29 +0.9 811,900 - ABZR87_RS03915 0.29 +0.5 811,900 - ABZR87_RS03915 0.29 +0.3 811,905 + ABZR87_RS03915 0.29 -1.0 811,905 + ABZR87_RS03915 0.29 +0.4 811,905 + ABZR87_RS03915 0.29 -0.9 811,905 + ABZR87_RS03915 0.29 -0.5 811,905 + ABZR87_RS03915 0.29 -1.8 811,906 - ABZR87_RS03915 0.29 -0.1 811,906 - ABZR87_RS03915 0.29 -1.8 811,914 + ABZR87_RS03915 0.29 -1.5 811,915 - ABZR87_RS03915 0.29 -1.7 811,915 - ABZR87_RS03915 0.29 -2.1 812,202 + ABZR87_RS03915 0.43 -1.2 812,203 - ABZR87_RS03915 0.43 -0.4 812,262 + ABZR87_RS03915 0.46 -0.2 812,262 + ABZR87_RS03915 0.46 -2.1 812,262 + ABZR87_RS03915 0.46 +1.1 812,263 - ABZR87_RS03915 0.46 -0.6 812,263 - ABZR87_RS03915 0.46 +0.1 812,263 - ABZR87_RS03915 0.46 -0.2 812,322 + ABZR87_RS03915 0.48 -0.3 812,539 - ABZR87_RS03915 0.59 -1.8 812,539 - ABZR87_RS03915 0.59 -0.4 812,625 + ABZR87_RS03915 0.63 +0.3 812,625 + ABZR87_RS03915 0.63 -1.2 812,625 + ABZR87_RS03915 0.63 -1.0 812,626 - ABZR87_RS03915 0.63 -1.3 812,626 - ABZR87_RS03915 0.63 +0.2 812,626 - ABZR87_RS03915 0.63 -1.1 812,709 + ABZR87_RS03915 0.67 +0.3 812,710 - ABZR87_RS03915 0.67 -2.0 812,710 - ABZR87_RS03915 0.67 -1.9 812,733 + ABZR87_RS03915 0.68 -0.8 812,733 + ABZR87_RS03915 0.68 -1.7 812,733 + ABZR87_RS03915 0.68 +0.6 812,734 - ABZR87_RS03915 0.68 -1.9 812,734 - ABZR87_RS03915 0.68 -0.4 812,734 - ABZR87_RS03915 0.68 -2.3 812,751 + ABZR87_RS03915 0.69 -1.8 812,868 + ABZR87_RS03915 0.74 +0.7 812,868 + ABZR87_RS03915 0.74 +0.8 812,868 + ABZR87_RS03915 0.74 -0.3 812,869 - ABZR87_RS03915 0.74 -0.7 812,869 - ABZR87_RS03915 0.74 -0.2 812,869 - ABZR87_RS03915 0.74 +0.3 812,869 - ABZR87_RS03915 0.74 -1.5 812,869 - ABZR87_RS03915 0.74 +0.0 812,869 - ABZR87_RS03915 0.74 -1.5 812,911 - ABZR87_RS03915 0.76 -0.5 813,133 + ABZR87_RS03915 0.86 -0.3 813,133 + ABZR87_RS03915 0.86 -0.4 813,134 - ABZR87_RS03915 0.86 +0.0 813,134 - ABZR87_RS03915 0.86 -1.5 813,134 - ABZR87_RS03915 0.86 -1.9 813,366 + -1.2 813,367 - -1.9 813,367 - -1.0 813,472 + -0.3 813,472 + -0.9 813,472 + +0.6 813,472 + +0.1 813,472 + +0.3 813,472 + -2.1 813,472 + -0.4 813,472 + -0.3 813,472 + +0.6 813,473 - +0.7 813,473 - +0.8 813,473 - +1.1 813,588 - -0.5 813,588 - +0.2 813,588 - -0.3 813,588 - +1.8 813,596 + +1.5 813,597 - +0.0 813,619 + +1.1 813,619 + +3.8 813,619 + +0.0 813,619 + -1.5 813,620 - -1.1 813,620 - +0.1 814,019 + -1.6 814,019 + -0.8 814,019 + +0.5 814,019 + -0.1 814,019 + +0.3 814,019 + -0.6 814,019 + +0.6 814,019 + -1.7 814,019 + +0.2 814,020 - +0.7 814,020 - +0.1 814,128 - -0.2 814,128 - -1.9 814,128 - -0.3 814,128 - +0.0 814,293 + +0.7 814,293 + +0.6 814,413 - -2.3 814,413 - -0.7
Or see this region's nucleotide sequence