Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02525

Experiment: soil sample 4; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02515 and ABZR87_RS02520 are separated by 59 nucleotidesABZR87_RS02520 and ABZR87_RS02525 overlap by 4 nucleotidesABZR87_RS02525 and ABZR87_RS02530 are separated by 251 nucleotidesABZR87_RS02530 and ABZR87_RS02535 are separated by 74 nucleotides ABZR87_RS02515: ABZR87_RS02515 - BolA family protein, at 533,289 to 533,525 _RS02515 ABZR87_RS02520: ABZR87_RS02520 - ABC transporter permease, at 533,585 to 534,373 _RS02520 ABZR87_RS02525: ABZR87_RS02525 - ABC transporter ATP-binding protein, at 534,370 to 535,335 _RS02525 ABZR87_RS02530: ABZR87_RS02530 - STAS domain-containing protein, at 535,587 to 535,898 _RS02530 ABZR87_RS02535: ABZR87_RS02535 - phospholipid-binding protein MlaC, at 535,973 to 536,608 _RS02535 Position (kb) 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.495 kb on - strand, within ABZR87_RS02515at 533.495 kb on - strand, within ABZR87_RS02515at 533.602 kb on - strandat 533.710 kb on - strand, within ABZR87_RS02520at 533.730 kb on + strand, within ABZR87_RS02520at 533.731 kb on - strand, within ABZR87_RS02520at 533.732 kb on + strand, within ABZR87_RS02520at 533.791 kb on - strand, within ABZR87_RS02520at 533.791 kb on - strand, within ABZR87_RS02520at 533.791 kb on - strand, within ABZR87_RS02520at 533.791 kb on - strand, within ABZR87_RS02520at 533.791 kb on - strand, within ABZR87_RS02520at 533.873 kb on - strand, within ABZR87_RS02520at 533.954 kb on + strand, within ABZR87_RS02520at 533.954 kb on + strand, within ABZR87_RS02520at 533.954 kb on + strand, within ABZR87_RS02520at 533.954 kb on + strand, within ABZR87_RS02520at 533.954 kb on + strand, within ABZR87_RS02520at 533.955 kb on - strand, within ABZR87_RS02520at 533.955 kb on - strand, within ABZR87_RS02520at 534.031 kb on - strand, within ABZR87_RS02520at 534.031 kb on - strand, within ABZR87_RS02520at 534.031 kb on - strand, within ABZR87_RS02520at 534.031 kb on - strand, within ABZR87_RS02520at 534.031 kb on - strand, within ABZR87_RS02520at 534.031 kb on - strand, within ABZR87_RS02520at 534.184 kb on - strand, within ABZR87_RS02520at 534.184 kb on - strand, within ABZR87_RS02520at 534.184 kb on - strand, within ABZR87_RS02520at 534.184 kb on - strand, within ABZR87_RS02520at 534.184 kb on - strand, within ABZR87_RS02520at 534.244 kb on - strand, within ABZR87_RS02520at 534.316 kb on - strandat 534.316 kb on - strandat 534.316 kb on - strandat 534.316 kb on - strandat 534.765 kb on - strand, within ABZR87_RS02525at 534.765 kb on - strand, within ABZR87_RS02525at 534.893 kb on - strand, within ABZR87_RS02525at 535.029 kb on - strand, within ABZR87_RS02525at 535.029 kb on - strand, within ABZR87_RS02525at 535.299 kb on - strandat 535.299 kb on - strandat 535.299 kb on - strandat 535.442 kb on - strandat 535.442 kb on - strandat 535.442 kb on - strandat 535.442 kb on - strandat 535.442 kb on - strandat 535.443 kb on + strandat 535.652 kb on - strand, within ABZR87_RS02530at 535.960 kb on - strandat 535.974 kb on + strandat 535.975 kb on - strandat 535.975 kb on - strandat 535.975 kb on - strandat 536.079 kb on + strand, within ABZR87_RS02535at 536.079 kb on + strand, within ABZR87_RS02535at 536.080 kb on - strand, within ABZR87_RS02535at 536.118 kb on + strand, within ABZR87_RS02535at 536.118 kb on + strand, within ABZR87_RS02535at 536.118 kb on + strand, within ABZR87_RS02535at 536.118 kb on + strand, within ABZR87_RS02535at 536.118 kb on + strand, within ABZR87_RS02535at 536.118 kb on + strand, within ABZR87_RS02535at 536.119 kb on - strand, within ABZR87_RS02535at 536.119 kb on - strand, within ABZR87_RS02535at 536.119 kb on - strand, within ABZR87_RS02535at 536.119 kb on - strand, within ABZR87_RS02535at 536.119 kb on - strand, within ABZR87_RS02535at 536.241 kb on + strand, within ABZR87_RS02535at 536.241 kb on + strand, within ABZR87_RS02535at 536.242 kb on - strand, within ABZR87_RS02535at 536.242 kb on - strand, within ABZR87_RS02535at 536.283 kb on + strand, within ABZR87_RS02535at 536.283 kb on - strand, within ABZR87_RS02535at 536.284 kb on - strand, within ABZR87_RS02535at 536.284 kb on - strand, within ABZR87_RS02535

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB
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533,495 - ABZR87_RS02515 0.87 +1.0
533,495 - ABZR87_RS02515 0.87 -0.0
533,602 - +0.0
533,710 - ABZR87_RS02520 0.16 +0.0
533,730 + ABZR87_RS02520 0.18 +2.4
533,731 - ABZR87_RS02520 0.19 +1.0
533,732 + ABZR87_RS02520 0.19 +1.4
533,791 - ABZR87_RS02520 0.26 -0.2
533,791 - ABZR87_RS02520 0.26 +0.0
533,791 - ABZR87_RS02520 0.26 -1.1
533,791 - ABZR87_RS02520 0.26 +0.3
533,791 - ABZR87_RS02520 0.26 -0.3
533,873 - ABZR87_RS02520 0.37 -0.6
533,954 + ABZR87_RS02520 0.47 +1.4
533,954 + ABZR87_RS02520 0.47 +0.1
533,954 + ABZR87_RS02520 0.47 +0.1
533,954 + ABZR87_RS02520 0.47 +0.4
533,954 + ABZR87_RS02520 0.47 +0.2
533,955 - ABZR87_RS02520 0.47 -0.3
533,955 - ABZR87_RS02520 0.47 -0.5
534,031 - ABZR87_RS02520 0.57 -0.3
534,031 - ABZR87_RS02520 0.57 +0.1
534,031 - ABZR87_RS02520 0.57 -0.7
534,031 - ABZR87_RS02520 0.57 -0.0
534,031 - ABZR87_RS02520 0.57 -1.3
534,031 - ABZR87_RS02520 0.57 -1.7
534,184 - ABZR87_RS02520 0.76 -2.8
534,184 - ABZR87_RS02520 0.76 +1.4
534,184 - ABZR87_RS02520 0.76 -0.0
534,184 - ABZR87_RS02520 0.76 -0.7
534,184 - ABZR87_RS02520 0.76 -0.4
534,244 - ABZR87_RS02520 0.84 +1.1
534,316 - +0.3
534,316 - -1.0
534,316 - +0.4
534,316 - -0.6
534,765 - ABZR87_RS02525 0.41 -2.1
534,765 - ABZR87_RS02525 0.41 -0.7
534,893 - ABZR87_RS02525 0.54 -1.1
535,029 - ABZR87_RS02525 0.68 -1.6
535,029 - ABZR87_RS02525 0.68 -0.4
535,299 - +0.9
535,299 - +0.9
535,299 - -0.2
535,442 - +0.6
535,442 - -1.2
535,442 - -0.3
535,442 - +0.6
535,442 - +0.4
535,443 + -0.7
535,652 - ABZR87_RS02530 0.21 +0.1
535,960 - -0.5
535,974 + +0.6
535,975 - -2.0
535,975 - -1.6
535,975 - -1.6
536,079 + ABZR87_RS02535 0.17 +0.1
536,079 + ABZR87_RS02535 0.17 -0.1
536,080 - ABZR87_RS02535 0.17 +0.7
536,118 + ABZR87_RS02535 0.23 -1.5
536,118 + ABZR87_RS02535 0.23 +0.9
536,118 + ABZR87_RS02535 0.23 +2.4
536,118 + ABZR87_RS02535 0.23 +1.1
536,118 + ABZR87_RS02535 0.23 -1.8
536,118 + ABZR87_RS02535 0.23 +1.9
536,119 - ABZR87_RS02535 0.23 +1.4
536,119 - ABZR87_RS02535 0.23 -0.6
536,119 - ABZR87_RS02535 0.23 +0.4
536,119 - ABZR87_RS02535 0.23 -2.3
536,119 - ABZR87_RS02535 0.23 -0.1
536,241 + ABZR87_RS02535 0.42 -1.8
536,241 + ABZR87_RS02535 0.42 -1.0
536,242 - ABZR87_RS02535 0.42 +0.4
536,242 - ABZR87_RS02535 0.42 -0.9
536,283 + ABZR87_RS02535 0.49 -1.3
536,283 - ABZR87_RS02535 0.49 -0.7
536,284 - ABZR87_RS02535 0.49 -1.0
536,284 - ABZR87_RS02535 0.49 -0.6

Or see this region's nucleotide sequence