Experiment: soil sample 4; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02495 and ABZR87_RS02500 are separated by 16 nucleotides ABZR87_RS02500 and ABZR87_RS02505 overlap by 4 nucleotides ABZR87_RS02505 and ABZR87_RS02510 are separated by 19 nucleotides
ABZR87_RS02495: ABZR87_RS02495 - histidinol-phosphate transaminase, at 528,750 to 529,874
_RS02495
ABZR87_RS02500: ABZR87_RS02500 - histidinol dehydrogenase, at 529,891 to 531,219
_RS02500
ABZR87_RS02505: ABZR87_RS02505 - ATP phosphoribosyltransferase, at 531,216 to 531,905
_RS02505
ABZR87_RS02510: ABZR87_RS02510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 531,925 to 533,190
_RS02510
Position (kb) 529
530
531
532 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 529.095 kb on - strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.097 kb on - strand, within ABZR87_RS02495 at 529.151 kb on - strand, within ABZR87_RS02495 at 529.258 kb on + strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.453 kb on - strand, within ABZR87_RS02495 at 529.495 kb on + strand, within ABZR87_RS02495 at 529.495 kb on + strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.735 kb on + strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.789 kb on + strand at 529.790 kb on - strand at 529.790 kb on - strand at 529.902 kb on + strand at 529.902 kb on + strand at 529.903 kb on - strand at 531.517 kb on + strand, within ABZR87_RS02505 at 531.566 kb on - strand, within ABZR87_RS02505 at 531.921 kb on + strand at 531.922 kb on - strand at 531.922 kb on - strand at 531.922 kb on - strand at 531.926 kb on + strand at 531.926 kb on + strand at 531.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 4; outgrowth in LB remove 529,095 - ABZR87_RS02495 0.31 +0.1 529,096 + ABZR87_RS02495 0.31 -0.8 529,096 + ABZR87_RS02495 0.31 -2.5 529,096 + ABZR87_RS02495 0.31 -0.2 529,096 + ABZR87_RS02495 0.31 -1.6 529,097 - ABZR87_RS02495 0.31 +0.4 529,151 - ABZR87_RS02495 0.36 -0.2 529,258 + ABZR87_RS02495 0.45 +0.1 529,259 - ABZR87_RS02495 0.45 -1.1 529,259 - ABZR87_RS02495 0.45 -0.4 529,259 - ABZR87_RS02495 0.45 -0.4 529,375 + ABZR87_RS02495 0.56 -1.1 529,375 + ABZR87_RS02495 0.56 +0.1 529,375 + ABZR87_RS02495 0.56 -0.7 529,375 + ABZR87_RS02495 0.56 +0.3 529,375 + ABZR87_RS02495 0.56 -0.5 529,376 - ABZR87_RS02495 0.56 -0.2 529,376 - ABZR87_RS02495 0.56 -1.2 529,376 - ABZR87_RS02495 0.56 +0.0 529,453 - ABZR87_RS02495 0.62 +0.6 529,495 + ABZR87_RS02495 0.66 -2.6 529,495 + ABZR87_RS02495 0.66 -1.3 529,496 - ABZR87_RS02495 0.66 +0.2 529,496 - ABZR87_RS02495 0.66 +0.3 529,496 - ABZR87_RS02495 0.66 +0.4 529,496 - ABZR87_RS02495 0.66 -1.1 529,496 - ABZR87_RS02495 0.66 -0.6 529,735 + ABZR87_RS02495 0.88 -1.7 529,736 - ABZR87_RS02495 0.88 -1.0 529,736 - ABZR87_RS02495 0.88 +0.4 529,736 - ABZR87_RS02495 0.88 +0.1 529,789 + -0.4 529,790 - +0.4 529,790 - -0.3 529,902 + +0.4 529,902 + +0.3 529,903 - -0.6 531,517 + ABZR87_RS02505 0.44 +3.4 531,566 - ABZR87_RS02505 0.51 +2.4 531,921 + -1.4 531,922 - +1.2 531,922 - +0.6 531,922 - -0.8 531,926 + +3.4 531,926 + +2.4 531,927 - -0.7
Or see this region's nucleotide sequence