Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36410 and RR42_RS36415 are separated by 65 nucleotides RR42_RS36415 and RR42_RS36420 are separated by 329 nucleotides RR42_RS36420 and RR42_RS36425 are separated by 31 nucleotides
RR42_RS36410: RR42_RS36410 - acyl-CoA synthetase, at 3,623,072 to 3,624,649
_RS36410
RR42_RS36415: RR42_RS36415 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,624,715 to 3,625,497
_RS36415
RR42_RS36420: RR42_RS36420 - membrane protein, at 3,625,827 to 3,626,072
_RS36420
RR42_RS36425: RR42_RS36425 - hypothetical protein, at 3,626,104 to 3,626,430
_RS36425
Position (kb)
3624
3625
3626 Strain fitness (log2 ratio)
-2
-1
0
1 at 3623.811 kb on + strand, within RR42_RS36410 at 3623.812 kb on - strand, within RR42_RS36410 at 3624.052 kb on + strand, within RR42_RS36410 at 3624.052 kb on + strand, within RR42_RS36410 at 3624.052 kb on + strand, within RR42_RS36410 at 3624.139 kb on + strand, within RR42_RS36410 at 3624.139 kb on + strand, within RR42_RS36410 at 3624.140 kb on - strand, within RR42_RS36410 at 3624.220 kb on - strand, within RR42_RS36410 at 3624.355 kb on + strand, within RR42_RS36410 at 3624.355 kb on + strand, within RR42_RS36410 at 3624.357 kb on + strand, within RR42_RS36410 at 3624.358 kb on - strand, within RR42_RS36410 at 3624.358 kb on - strand, within RR42_RS36410 at 3624.466 kb on - strand, within RR42_RS36410 at 3624.546 kb on + strand at 3624.573 kb on + strand at 3624.770 kb on + strand at 3624.771 kb on - strand at 3624.771 kb on - strand at 3625.002 kb on - strand, within RR42_RS36415 at 3625.047 kb on + strand, within RR42_RS36415 at 3625.603 kb on - strand at 3625.849 kb on + strand at 3625.849 kb on + strand at 3626.166 kb on + strand, within RR42_RS36425 at 3626.166 kb on + strand, within RR42_RS36425 at 3626.167 kb on - strand, within RR42_RS36425 at 3626.167 kb on - strand, within RR42_RS36425 at 3626.167 kb on - strand, within RR42_RS36425 at 3626.168 kb on + strand, within RR42_RS36425 at 3626.169 kb on - strand, within RR42_RS36425 at 3626.169 kb on - strand, within RR42_RS36425 at 3626.169 kb on - strand, within RR42_RS36425 at 3626.169 kb on - strand, within RR42_RS36425 at 3626.195 kb on + strand, within RR42_RS36425 at 3626.216 kb on + strand, within RR42_RS36425 at 3626.216 kb on + strand, within RR42_RS36425 at 3626.216 kb on + strand, within RR42_RS36425
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,623,811 + RR42_RS36410 0.47 +0.3 3,623,812 - RR42_RS36410 0.47 +1.0 3,624,052 + RR42_RS36410 0.62 -1.2 3,624,052 + RR42_RS36410 0.62 +0.3 3,624,052 + RR42_RS36410 0.62 -0.0 3,624,139 + RR42_RS36410 0.68 +0.2 3,624,139 + RR42_RS36410 0.68 -0.3 3,624,140 - RR42_RS36410 0.68 +0.5 3,624,220 - RR42_RS36410 0.73 +0.2 3,624,355 + RR42_RS36410 0.81 +0.2 3,624,355 + RR42_RS36410 0.81 -0.2 3,624,357 + RR42_RS36410 0.81 -0.1 3,624,358 - RR42_RS36410 0.81 -0.5 3,624,358 - RR42_RS36410 0.81 +0.0 3,624,466 - RR42_RS36410 0.88 -0.5 3,624,546 + +0.3 3,624,573 + -0.5 3,624,770 + +0.4 3,624,771 - +0.0 3,624,771 - +0.9 3,625,002 - RR42_RS36415 0.37 -1.0 3,625,047 + RR42_RS36415 0.42 -1.2 3,625,603 - +0.9 3,625,849 + +0.1 3,625,849 + -1.2 3,626,166 + RR42_RS36425 0.19 -0.2 3,626,166 + RR42_RS36425 0.19 +0.0 3,626,167 - RR42_RS36425 0.19 +0.3 3,626,167 - RR42_RS36425 0.19 +0.2 3,626,167 - RR42_RS36425 0.19 +0.8 3,626,168 + RR42_RS36425 0.20 -1.3 3,626,169 - RR42_RS36425 0.20 +0.0 3,626,169 - RR42_RS36425 0.20 -1.8 3,626,169 - RR42_RS36425 0.20 -0.3 3,626,169 - RR42_RS36425 0.20 -1.6 3,626,195 + RR42_RS36425 0.28 +0.0 3,626,216 + RR42_RS36425 0.34 -0.8 3,626,216 + RR42_RS36425 0.34 +1.3 3,626,216 + RR42_RS36425 0.34 +1.0
Or see this region's nucleotide sequence