Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36415

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36410 and RR42_RS36415 are separated by 65 nucleotidesRR42_RS36415 and RR42_RS36420 are separated by 329 nucleotidesRR42_RS36420 and RR42_RS36425 are separated by 31 nucleotides RR42_RS36410: RR42_RS36410 - acyl-CoA synthetase, at 3,623,072 to 3,624,649 _RS36410 RR42_RS36415: RR42_RS36415 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,624,715 to 3,625,497 _RS36415 RR42_RS36420: RR42_RS36420 - membrane protein, at 3,625,827 to 3,626,072 _RS36420 RR42_RS36425: RR42_RS36425 - hypothetical protein, at 3,626,104 to 3,626,430 _RS36425 Position (kb) 3624 3625 3626Strain fitness (log2 ratio) -2 -1 0 1at 3623.811 kb on + strand, within RR42_RS36410at 3623.812 kb on - strand, within RR42_RS36410at 3624.052 kb on + strand, within RR42_RS36410at 3624.052 kb on + strand, within RR42_RS36410at 3624.052 kb on + strand, within RR42_RS36410at 3624.139 kb on + strand, within RR42_RS36410at 3624.139 kb on + strand, within RR42_RS36410at 3624.140 kb on - strand, within RR42_RS36410at 3624.220 kb on - strand, within RR42_RS36410at 3624.355 kb on + strand, within RR42_RS36410at 3624.355 kb on + strand, within RR42_RS36410at 3624.357 kb on + strand, within RR42_RS36410at 3624.358 kb on - strand, within RR42_RS36410at 3624.358 kb on - strand, within RR42_RS36410at 3624.466 kb on - strand, within RR42_RS36410at 3624.546 kb on + strandat 3624.573 kb on + strandat 3624.770 kb on + strandat 3624.771 kb on - strandat 3624.771 kb on - strandat 3625.002 kb on - strand, within RR42_RS36415at 3625.047 kb on + strand, within RR42_RS36415at 3625.603 kb on - strandat 3625.849 kb on + strandat 3625.849 kb on + strandat 3626.166 kb on + strand, within RR42_RS36425at 3626.166 kb on + strand, within RR42_RS36425at 3626.167 kb on - strand, within RR42_RS36425at 3626.167 kb on - strand, within RR42_RS36425at 3626.167 kb on - strand, within RR42_RS36425at 3626.168 kb on + strand, within RR42_RS36425at 3626.169 kb on - strand, within RR42_RS36425at 3626.169 kb on - strand, within RR42_RS36425at 3626.169 kb on - strand, within RR42_RS36425at 3626.169 kb on - strand, within RR42_RS36425at 3626.195 kb on + strand, within RR42_RS36425at 3626.216 kb on + strand, within RR42_RS36425at 3626.216 kb on + strand, within RR42_RS36425at 3626.216 kb on + strand, within RR42_RS36425

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,623,811 + RR42_RS36410 0.47 +0.3
3,623,812 - RR42_RS36410 0.47 +1.0
3,624,052 + RR42_RS36410 0.62 -1.2
3,624,052 + RR42_RS36410 0.62 +0.3
3,624,052 + RR42_RS36410 0.62 -0.0
3,624,139 + RR42_RS36410 0.68 +0.2
3,624,139 + RR42_RS36410 0.68 -0.3
3,624,140 - RR42_RS36410 0.68 +0.5
3,624,220 - RR42_RS36410 0.73 +0.2
3,624,355 + RR42_RS36410 0.81 +0.2
3,624,355 + RR42_RS36410 0.81 -0.2
3,624,357 + RR42_RS36410 0.81 -0.1
3,624,358 - RR42_RS36410 0.81 -0.5
3,624,358 - RR42_RS36410 0.81 +0.0
3,624,466 - RR42_RS36410 0.88 -0.5
3,624,546 + +0.3
3,624,573 + -0.5
3,624,770 + +0.4
3,624,771 - +0.0
3,624,771 - +0.9
3,625,002 - RR42_RS36415 0.37 -1.0
3,625,047 + RR42_RS36415 0.42 -1.2
3,625,603 - +0.9
3,625,849 + +0.1
3,625,849 + -1.2
3,626,166 + RR42_RS36425 0.19 -0.2
3,626,166 + RR42_RS36425 0.19 +0.0
3,626,167 - RR42_RS36425 0.19 +0.3
3,626,167 - RR42_RS36425 0.19 +0.2
3,626,167 - RR42_RS36425 0.19 +0.8
3,626,168 + RR42_RS36425 0.20 -1.3
3,626,169 - RR42_RS36425 0.20 +0.0
3,626,169 - RR42_RS36425 0.20 -1.8
3,626,169 - RR42_RS36425 0.20 -0.3
3,626,169 - RR42_RS36425 0.20 -1.6
3,626,195 + RR42_RS36425 0.28 +0.0
3,626,216 + RR42_RS36425 0.34 -0.8
3,626,216 + RR42_RS36425 0.34 +1.3
3,626,216 + RR42_RS36425 0.34 +1.0

Or see this region's nucleotide sequence