Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36345

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS36335 and RR42_RS36340 are separated by 17 nucleotidesRR42_RS36340 and RR42_RS36345 are separated by 208 nucleotidesRR42_RS36345 and RR42_RS36350 overlap by 4 nucleotides RR42_RS36335: RR42_RS36335 - enoyl-CoA hydratase, at 3,604,247 to 3,605,134 _RS36335 RR42_RS36340: RR42_RS36340 - NADH dehydrogenase, at 3,605,152 to 3,605,823 _RS36340 RR42_RS36345: RR42_RS36345 - hydroxyproline-2-epimerase, at 3,606,032 to 3,607,000 _RS36345 RR42_RS36350: RR42_RS36350 - D-amino acid oxidase, at 3,606,997 to 3,608,097 _RS36350 Position (kb) 3606 3607 3608Strain fitness (log2 ratio) -2 -1 0 1 2at 3605.129 kb on - strandat 3605.380 kb on + strand, within RR42_RS36340at 3605.381 kb on - strand, within RR42_RS36340at 3605.381 kb on - strand, within RR42_RS36340at 3605.389 kb on + strand, within RR42_RS36340at 3605.596 kb on + strand, within RR42_RS36340at 3605.596 kb on + strand, within RR42_RS36340at 3605.596 kb on + strand, within RR42_RS36340at 3605.596 kb on + strand, within RR42_RS36340at 3605.597 kb on - strand, within RR42_RS36340at 3605.597 kb on - strand, within RR42_RS36340at 3605.860 kb on + strandat 3605.860 kb on + strandat 3605.928 kb on - strandat 3606.272 kb on + strand, within RR42_RS36345at 3606.362 kb on - strand, within RR42_RS36345at 3606.362 kb on - strand, within RR42_RS36345at 3606.647 kb on - strand, within RR42_RS36345at 3606.722 kb on + strand, within RR42_RS36345at 3606.723 kb on - strand, within RR42_RS36345at 3606.848 kb on + strand, within RR42_RS36345at 3606.848 kb on + strand, within RR42_RS36345at 3606.848 kb on + strand, within RR42_RS36345at 3606.849 kb on - strand, within RR42_RS36345at 3606.849 kb on - strand, within RR42_RS36345at 3606.908 kb on + strandat 3606.909 kb on - strandat 3606.909 kb on - strandat 3607.861 kb on + strand, within RR42_RS36350at 3607.862 kb on - strand, within RR42_RS36350at 3607.862 kb on - strand, within RR42_RS36350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
3,605,129 - +0.1
3,605,380 + RR42_RS36340 0.34 +0.0
3,605,381 - RR42_RS36340 0.34 -0.3
3,605,381 - RR42_RS36340 0.34 +1.0
3,605,389 + RR42_RS36340 0.35 -0.8
3,605,596 + RR42_RS36340 0.66 +0.0
3,605,596 + RR42_RS36340 0.66 +0.3
3,605,596 + RR42_RS36340 0.66 +0.1
3,605,596 + RR42_RS36340 0.66 -1.0
3,605,597 - RR42_RS36340 0.66 -0.1
3,605,597 - RR42_RS36340 0.66 +0.5
3,605,860 + +0.0
3,605,860 + +1.0
3,605,928 - -0.3
3,606,272 + RR42_RS36345 0.25 -0.2
3,606,362 - RR42_RS36345 0.34 +0.7
3,606,362 - RR42_RS36345 0.34 -1.8
3,606,647 - RR42_RS36345 0.63 -0.1
3,606,722 + RR42_RS36345 0.71 +1.5
3,606,723 - RR42_RS36345 0.71 -0.8
3,606,848 + RR42_RS36345 0.84 -1.0
3,606,848 + RR42_RS36345 0.84 +0.0
3,606,848 + RR42_RS36345 0.84 +1.4
3,606,849 - RR42_RS36345 0.84 +1.9
3,606,849 - RR42_RS36345 0.84 +0.4
3,606,908 + +0.6
3,606,909 - +0.2
3,606,909 - +0.2
3,607,861 + RR42_RS36350 0.78 -0.1
3,607,862 - RR42_RS36350 0.79 +0.0
3,607,862 - RR42_RS36350 0.79 -0.1

Or see this region's nucleotide sequence