Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36335 and RR42_RS36340 are separated by 17 nucleotides RR42_RS36340 and RR42_RS36345 are separated by 208 nucleotides RR42_RS36345 and RR42_RS36350 overlap by 4 nucleotides
RR42_RS36335: RR42_RS36335 - enoyl-CoA hydratase, at 3,604,247 to 3,605,134
_RS36335
RR42_RS36340: RR42_RS36340 - NADH dehydrogenase, at 3,605,152 to 3,605,823
_RS36340
RR42_RS36345: RR42_RS36345 - hydroxyproline-2-epimerase, at 3,606,032 to 3,607,000
_RS36345
RR42_RS36350: RR42_RS36350 - D-amino acid oxidase, at 3,606,997 to 3,608,097
_RS36350
Position (kb)
3606
3607
3608 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3605.129 kb on - strand at 3605.380 kb on + strand, within RR42_RS36340 at 3605.381 kb on - strand, within RR42_RS36340 at 3605.381 kb on - strand, within RR42_RS36340 at 3605.389 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.597 kb on - strand, within RR42_RS36340 at 3605.597 kb on - strand, within RR42_RS36340 at 3605.860 kb on + strand at 3605.860 kb on + strand at 3605.928 kb on - strand at 3606.272 kb on + strand, within RR42_RS36345 at 3606.362 kb on - strand, within RR42_RS36345 at 3606.362 kb on - strand, within RR42_RS36345 at 3606.647 kb on - strand, within RR42_RS36345 at 3606.722 kb on + strand, within RR42_RS36345 at 3606.723 kb on - strand, within RR42_RS36345 at 3606.848 kb on + strand, within RR42_RS36345 at 3606.848 kb on + strand, within RR42_RS36345 at 3606.848 kb on + strand, within RR42_RS36345 at 3606.849 kb on - strand, within RR42_RS36345 at 3606.849 kb on - strand, within RR42_RS36345 at 3606.908 kb on + strand at 3606.909 kb on - strand at 3606.909 kb on - strand at 3607.861 kb on + strand, within RR42_RS36350 at 3607.862 kb on - strand, within RR42_RS36350 at 3607.862 kb on - strand, within RR42_RS36350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,605,129 - +0.1 3,605,380 + RR42_RS36340 0.34 +0.0 3,605,381 - RR42_RS36340 0.34 -0.3 3,605,381 - RR42_RS36340 0.34 +1.0 3,605,389 + RR42_RS36340 0.35 -0.8 3,605,596 + RR42_RS36340 0.66 +0.0 3,605,596 + RR42_RS36340 0.66 +0.3 3,605,596 + RR42_RS36340 0.66 +0.1 3,605,596 + RR42_RS36340 0.66 -1.0 3,605,597 - RR42_RS36340 0.66 -0.1 3,605,597 - RR42_RS36340 0.66 +0.5 3,605,860 + +0.0 3,605,860 + +1.0 3,605,928 - -0.3 3,606,272 + RR42_RS36345 0.25 -0.2 3,606,362 - RR42_RS36345 0.34 +0.7 3,606,362 - RR42_RS36345 0.34 -1.8 3,606,647 - RR42_RS36345 0.63 -0.1 3,606,722 + RR42_RS36345 0.71 +1.5 3,606,723 - RR42_RS36345 0.71 -0.8 3,606,848 + RR42_RS36345 0.84 -1.0 3,606,848 + RR42_RS36345 0.84 +0.0 3,606,848 + RR42_RS36345 0.84 +1.4 3,606,849 - RR42_RS36345 0.84 +1.9 3,606,849 - RR42_RS36345 0.84 +0.4 3,606,908 + +0.6 3,606,909 - +0.2 3,606,909 - +0.2 3,607,861 + RR42_RS36350 0.78 -0.1 3,607,862 - RR42_RS36350 0.79 +0.0 3,607,862 - RR42_RS36350 0.79 -0.1
Or see this region's nucleotide sequence