Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36270 and RR42_RS36275 are separated by 414 nucleotides RR42_RS36275 and RR42_RS36280 overlap by 4 nucleotides
RR42_RS36270: RR42_RS36270 - patatin, at 3,587,608 to 3,589,935
_RS36270
RR42_RS36275: RR42_RS36275 - ABC transporter substrate-binding protein, at 3,590,350 to 3,591,348
_RS36275
RR42_RS36280: RR42_RS36280 - hypothetical protein, at 3,591,345 to 3,592,685
_RS36280
Position (kb)
3590
3591
3592 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3589.637 kb on + strand, within RR42_RS36270 at 3589.733 kb on + strand at 3589.990 kb on + strand at 3590.129 kb on - strand at 3590.143 kb on + strand at 3590.252 kb on + strand at 3590.252 kb on + strand at 3590.253 kb on - strand at 3590.253 kb on - strand at 3590.253 kb on - strand at 3590.253 kb on - strand at 3590.262 kb on - strand at 3590.351 kb on + strand at 3590.594 kb on + strand, within RR42_RS36275 at 3590.700 kb on + strand, within RR42_RS36275 at 3590.719 kb on - strand, within RR42_RS36275 at 3590.719 kb on - strand, within RR42_RS36275 at 3590.772 kb on - strand, within RR42_RS36275 at 3590.878 kb on - strand, within RR42_RS36275 at 3590.944 kb on + strand, within RR42_RS36275 at 3590.945 kb on - strand, within RR42_RS36275 at 3590.996 kb on + strand, within RR42_RS36275 at 3591.060 kb on - strand, within RR42_RS36275 at 3591.147 kb on - strand, within RR42_RS36275 at 3591.440 kb on - strand at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.752 kb on - strand, within RR42_RS36280 at 3591.752 kb on - strand, within RR42_RS36280 at 3591.752 kb on - strand, within RR42_RS36280 at 3591.784 kb on + strand, within RR42_RS36280 at 3591.784 kb on + strand, within RR42_RS36280 at 3591.784 kb on + strand, within RR42_RS36280 at 3591.785 kb on - strand, within RR42_RS36280 at 3592.339 kb on + strand, within RR42_RS36280 at 3592.340 kb on - strand, within RR42_RS36280 at 3592.340 kb on - strand, within RR42_RS36280
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,589,637 + RR42_RS36270 0.87 -0.5 3,589,733 + +0.1 3,589,990 + +0.4 3,590,129 - -0.3 3,590,143 + -1.3 3,590,252 + -1.0 3,590,252 + +0.3 3,590,253 - -2.8 3,590,253 - +0.0 3,590,253 - +0.6 3,590,253 - +0.0 3,590,262 - +0.1 3,590,351 + -0.2 3,590,594 + RR42_RS36275 0.24 -0.9 3,590,700 + RR42_RS36275 0.35 +0.3 3,590,719 - RR42_RS36275 0.37 -0.6 3,590,719 - RR42_RS36275 0.37 -1.3 3,590,772 - RR42_RS36275 0.42 -0.5 3,590,878 - RR42_RS36275 0.53 -1.3 3,590,944 + RR42_RS36275 0.59 -0.5 3,590,945 - RR42_RS36275 0.60 -0.2 3,590,996 + RR42_RS36275 0.65 -0.7 3,591,060 - RR42_RS36275 0.71 -1.4 3,591,147 - RR42_RS36275 0.80 +0.2 3,591,440 - +0.9 3,591,634 + RR42_RS36280 0.22 -0.2 3,591,634 + RR42_RS36280 0.22 +0.3 3,591,634 + RR42_RS36280 0.22 +0.0 3,591,634 + RR42_RS36280 0.22 +1.0 3,591,634 + RR42_RS36280 0.22 -2.1 3,591,752 - RR42_RS36280 0.30 +0.5 3,591,752 - RR42_RS36280 0.30 +0.2 3,591,752 - RR42_RS36280 0.30 -0.3 3,591,784 + RR42_RS36280 0.33 +0.6 3,591,784 + RR42_RS36280 0.33 +0.7 3,591,784 + RR42_RS36280 0.33 +0.6 3,591,785 - RR42_RS36280 0.33 +1.0 3,592,339 + RR42_RS36280 0.74 -0.3 3,592,340 - RR42_RS36280 0.74 -1.1 3,592,340 - RR42_RS36280 0.74 +1.0
Or see this region's nucleotide sequence