Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34710

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34710 and RR42_RS34715 are separated by 654 nucleotides RR42_RS34710: RR42_RS34710 - chemotaxis protein CheY, at 3,229,702 to 3,230,868 _RS34710 RR42_RS34715: RR42_RS34715 - hypothetical protein, at 3,231,523 to 3,231,942 _RS34715 Position (kb) 3229 3230 3231Strain fitness (log2 ratio) -1 0 1at 3228.765 kb on + strandat 3228.766 kb on - strandat 3228.774 kb on + strandat 3228.775 kb on - strandat 3228.775 kb on - strandat 3228.781 kb on - strandat 3228.996 kb on + strandat 3229.074 kb on - strandat 3229.312 kb on - strandat 3229.563 kb on + strandat 3229.564 kb on - strandat 3229.623 kb on + strandat 3229.629 kb on + strandat 3229.630 kb on - strandat 3229.784 kb on + strandat 3229.882 kb on + strand, within RR42_RS34710at 3229.882 kb on + strand, within RR42_RS34710at 3229.914 kb on - strand, within RR42_RS34710at 3229.914 kb on - strand, within RR42_RS34710at 3230.036 kb on + strand, within RR42_RS34710at 3230.315 kb on + strand, within RR42_RS34710at 3230.316 kb on - strand, within RR42_RS34710at 3230.547 kb on - strand, within RR42_RS34710at 3230.547 kb on - strand, within RR42_RS34710at 3230.547 kb on - strand, within RR42_RS34710at 3230.888 kb on + strandat 3230.889 kb on - strandat 3230.889 kb on - strandat 3231.254 kb on + strandat 3231.410 kb on - strandat 3231.415 kb on + strandat 3231.539 kb on + strandat 3231.540 kb on - strandat 3231.540 kb on - strandat 3231.624 kb on - strand, within RR42_RS34715at 3231.749 kb on - strand, within RR42_RS34715at 3231.810 kb on + strand, within RR42_RS34715at 3231.811 kb on - strand, within RR42_RS34715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,228,765 + +0.1
3,228,766 - +1.2
3,228,774 + -0.7
3,228,775 - +0.4
3,228,775 - +1.6
3,228,781 - +0.5
3,228,996 + -0.2
3,229,074 - +0.2
3,229,312 - -1.3
3,229,563 + +0.8
3,229,564 - +1.3
3,229,623 + +0.2
3,229,629 + -1.4
3,229,630 - -0.7
3,229,784 + -1.1
3,229,882 + RR42_RS34710 0.15 +1.0
3,229,882 + RR42_RS34710 0.15 +0.6
3,229,914 - RR42_RS34710 0.18 +1.5
3,229,914 - RR42_RS34710 0.18 +0.5
3,230,036 + RR42_RS34710 0.29 -0.0
3,230,315 + RR42_RS34710 0.53 +0.6
3,230,316 - RR42_RS34710 0.53 +1.0
3,230,547 - RR42_RS34710 0.72 -0.2
3,230,547 - RR42_RS34710 0.72 +0.1
3,230,547 - RR42_RS34710 0.72 +0.1
3,230,888 + +0.8
3,230,889 - +1.3
3,230,889 - -0.0
3,231,254 + -0.1
3,231,410 - +0.2
3,231,415 + +0.5
3,231,539 + -0.4
3,231,540 - -1.2
3,231,540 - +0.7
3,231,624 - RR42_RS34715 0.24 -0.6
3,231,749 - RR42_RS34715 0.54 +0.0
3,231,810 + RR42_RS34715 0.68 +0.0
3,231,811 - RR42_RS34715 0.69 +1.1

Or see this region's nucleotide sequence