Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32825 and RR42_RS32830 are separated by 220 nucleotides RR42_RS32830 and RR42_RS32835 are separated by 325 nucleotides
RR42_RS32825: RR42_RS32825 - ATPase, at 2,759,531 to 2,762,164
_RS32825
RR42_RS32830: RR42_RS32830 - hypothetical protein, at 2,762,385 to 2,762,579
_RS32830
RR42_RS32835: RR42_RS32835 - hypothetical protein, at 2,762,905 to 2,764,092
_RS32835
Position (kb)
2762
2763 Strain fitness (log2 ratio)
-1
0
1
2 at 2761.549 kb on + strand, within RR42_RS32825 at 2761.608 kb on + strand, within RR42_RS32825 at 2761.609 kb on - strand, within RR42_RS32825 at 2761.668 kb on + strand, within RR42_RS32825 at 2761.668 kb on + strand, within RR42_RS32825 at 2761.668 kb on + strand, within RR42_RS32825 at 2761.668 kb on + strand, within RR42_RS32825 at 2761.668 kb on + strand, within RR42_RS32825 at 2761.669 kb on - strand, within RR42_RS32825 at 2761.678 kb on + strand, within RR42_RS32825 at 2761.679 kb on - strand, within RR42_RS32825 at 2761.789 kb on + strand, within RR42_RS32825 at 2761.789 kb on + strand, within RR42_RS32825 at 2761.789 kb on + strand, within RR42_RS32825 at 2761.790 kb on - strand, within RR42_RS32825 at 2761.894 kb on - strand, within RR42_RS32825 at 2761.894 kb on - strand, within RR42_RS32825 at 2761.894 kb on - strand, within RR42_RS32825 at 2761.936 kb on + strand at 2762.022 kb on + strand at 2762.040 kb on - strand at 2762.056 kb on + strand at 2762.056 kb on + strand at 2762.247 kb on + strand at 2762.247 kb on + strand at 2762.268 kb on - strand at 2762.373 kb on + strand at 2762.447 kb on + strand, within RR42_RS32830 at 2762.448 kb on - strand, within RR42_RS32830 at 2762.448 kb on - strand, within RR42_RS32830 at 2762.505 kb on + strand, within RR42_RS32830 at 2762.572 kb on - strand at 2762.572 kb on - strand at 2762.703 kb on - strand at 2762.784 kb on + strand at 2762.785 kb on - strand at 2762.785 kb on - strand at 2762.785 kb on - strand at 2762.827 kb on - strand at 2762.907 kb on - strand at 2763.214 kb on - strand, within RR42_RS32835 at 2763.367 kb on + strand, within RR42_RS32835 at 2763.463 kb on + strand, within RR42_RS32835 at 2763.521 kb on + strand, within RR42_RS32835 at 2763.522 kb on - strand, within RR42_RS32835 at 2763.522 kb on - strand, within RR42_RS32835
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,761,549 + RR42_RS32825 0.77 -0.2 2,761,608 + RR42_RS32825 0.79 +0.3 2,761,609 - RR42_RS32825 0.79 -1.3 2,761,668 + RR42_RS32825 0.81 +0.0 2,761,668 + RR42_RS32825 0.81 +0.9 2,761,668 + RR42_RS32825 0.81 +0.6 2,761,668 + RR42_RS32825 0.81 +0.5 2,761,668 + RR42_RS32825 0.81 +0.4 2,761,669 - RR42_RS32825 0.81 -1.3 2,761,678 + RR42_RS32825 0.82 -0.4 2,761,679 - RR42_RS32825 0.82 +0.7 2,761,789 + RR42_RS32825 0.86 -0.3 2,761,789 + RR42_RS32825 0.86 +0.6 2,761,789 + RR42_RS32825 0.86 +0.8 2,761,790 - RR42_RS32825 0.86 +1.0 2,761,894 - RR42_RS32825 0.90 +0.7 2,761,894 - RR42_RS32825 0.90 -0.0 2,761,894 - RR42_RS32825 0.90 -0.6 2,761,936 + -0.4 2,762,022 + +0.4 2,762,040 - +0.1 2,762,056 + -0.9 2,762,056 + +1.9 2,762,247 + -1.3 2,762,247 + -0.1 2,762,268 - -0.3 2,762,373 + -0.5 2,762,447 + RR42_RS32830 0.32 +1.2 2,762,448 - RR42_RS32830 0.32 -0.2 2,762,448 - RR42_RS32830 0.32 +1.6 2,762,505 + RR42_RS32830 0.62 +0.7 2,762,572 - -0.6 2,762,572 - +0.2 2,762,703 - -0.2 2,762,784 + -0.2 2,762,785 - +2.3 2,762,785 - +0.5 2,762,785 - +0.1 2,762,827 - +0.0 2,762,907 - -1.1 2,763,214 - RR42_RS32835 0.26 +0.4 2,763,367 + RR42_RS32835 0.39 +0.3 2,763,463 + RR42_RS32835 0.47 +0.7 2,763,521 + RR42_RS32835 0.52 -0.1 2,763,522 - RR42_RS32835 0.52 +0.0 2,763,522 - RR42_RS32835 0.52 -0.1
Or see this region's nucleotide sequence