Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32180

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32175 and RR42_RS32180 are separated by 618 nucleotidesRR42_RS32180 and RR42_RS32185 are separated by 5 nucleotides RR42_RS32175: RR42_RS32175 - membrane protein, at 2,605,895 to 2,606,977 _RS32175 RR42_RS32180: RR42_RS32180 - tripartite tricarboxylate transporter TctB, at 2,607,596 to 2,608,030 _RS32180 RR42_RS32185: RR42_RS32185 - hypothetical protein, at 2,608,036 to 2,609,577 _RS32185 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -1 0 1at 2606.652 kb on + strand, within RR42_RS32175at 2606.653 kb on - strand, within RR42_RS32175at 2606.731 kb on + strand, within RR42_RS32175at 2606.732 kb on - strand, within RR42_RS32175at 2606.732 kb on - strand, within RR42_RS32175at 2606.732 kb on - strand, within RR42_RS32175at 2606.883 kb on + strandat 2606.884 kb on - strandat 2606.884 kb on - strandat 2606.885 kb on + strandat 2606.885 kb on + strandat 2606.993 kb on + strandat 2607.090 kb on - strandat 2607.407 kb on + strandat 2607.408 kb on - strandat 2607.408 kb on - strandat 2607.578 kb on + strandat 2607.578 kb on + strandat 2607.621 kb on + strandat 2607.622 kb on - strandat 2607.699 kb on + strand, within RR42_RS32180at 2607.700 kb on - strand, within RR42_RS32180at 2607.857 kb on + strand, within RR42_RS32180at 2608.199 kb on - strand, within RR42_RS32185at 2608.199 kb on - strand, within RR42_RS32185at 2608.199 kb on - strand, within RR42_RS32185at 2608.247 kb on - strand, within RR42_RS32185at 2608.247 kb on - strand, within RR42_RS32185at 2608.247 kb on - strand, within RR42_RS32185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,606,652 + RR42_RS32175 0.70 -0.4
2,606,653 - RR42_RS32175 0.70 +0.9
2,606,731 + RR42_RS32175 0.77 -0.1
2,606,732 - RR42_RS32175 0.77 +0.3
2,606,732 - RR42_RS32175 0.77 -0.2
2,606,732 - RR42_RS32175 0.77 -0.6
2,606,883 + +0.0
2,606,884 - +0.6
2,606,884 - -0.5
2,606,885 + -0.3
2,606,885 + -0.4
2,606,993 + -0.2
2,607,090 - -0.2
2,607,407 + +0.3
2,607,408 - -0.9
2,607,408 - +0.4
2,607,578 + +0.1
2,607,578 + -0.3
2,607,621 + +0.6
2,607,622 - +0.0
2,607,699 + RR42_RS32180 0.24 +0.3
2,607,700 - RR42_RS32180 0.24 +1.4
2,607,857 + RR42_RS32180 0.60 -0.2
2,608,199 - RR42_RS32185 0.11 +0.0
2,608,199 - RR42_RS32185 0.11 -0.9
2,608,199 - RR42_RS32185 0.11 +0.7
2,608,247 - RR42_RS32185 0.14 +1.0
2,608,247 - RR42_RS32185 0.14 -0.2
2,608,247 - RR42_RS32185 0.14 +0.3

Or see this region's nucleotide sequence