Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26760 and RR42_RS26765 are separated by 40 nucleotides RR42_RS26765 and RR42_RS26770 are separated by 58 nucleotides RR42_RS26770 and RR42_RS26775 are separated by 5 nucleotides
RR42_RS26760: RR42_RS26760 - hypothetical protein, at 1,357,748 to 1,358,161
_RS26760
RR42_RS26765: RR42_RS26765 - polyketide cyclase, at 1,358,202 to 1,358,738
_RS26765
RR42_RS26770: RR42_RS26770 - extradiol dioxygenase, at 1,358,797 to 1,359,213
_RS26770
RR42_RS26775: RR42_RS26775 - RNA polymerase subunit sigma-24, at 1,359,219 to 1,360,505
_RS26775
Position (kb)
1358
1359
1360 Strain fitness (log2 ratio)
-1
0
1
2 at 1357.836 kb on - strand, within RR42_RS26760 at 1357.836 kb on - strand, within RR42_RS26760 at 1357.916 kb on + strand, within RR42_RS26760 at 1357.982 kb on + strand, within RR42_RS26760 at 1358.079 kb on + strand, within RR42_RS26760 at 1358.079 kb on + strand, within RR42_RS26760 at 1358.080 kb on - strand, within RR42_RS26760 at 1358.277 kb on - strand, within RR42_RS26765 at 1358.277 kb on - strand, within RR42_RS26765 at 1358.407 kb on - strand, within RR42_RS26765 at 1358.407 kb on - strand, within RR42_RS26765 at 1358.467 kb on + strand, within RR42_RS26765 at 1358.467 kb on + strand, within RR42_RS26765 at 1358.625 kb on + strand, within RR42_RS26765 at 1358.802 kb on + strand at 1358.803 kb on - strand at 1358.812 kb on + strand at 1358.813 kb on - strand at 1359.125 kb on - strand, within RR42_RS26770 at 1359.157 kb on - strand, within RR42_RS26770 at 1359.157 kb on - strand, within RR42_RS26770 at 1359.172 kb on + strand at 1359.172 kb on + strand at 1359.174 kb on + strand at 1359.174 kb on + strand at 1359.175 kb on - strand at 1359.517 kb on + strand, within RR42_RS26775 at 1359.518 kb on - strand, within RR42_RS26775 at 1359.822 kb on + strand, within RR42_RS26775 at 1359.822 kb on + strand, within RR42_RS26775 at 1359.822 kb on + strand, within RR42_RS26775 at 1360.209 kb on + strand, within RR42_RS26775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,357,836 - RR42_RS26760 0.21 +0.5 1,357,836 - RR42_RS26760 0.21 +0.2 1,357,916 + RR42_RS26760 0.41 -0.3 1,357,982 + RR42_RS26760 0.57 -1.3 1,358,079 + RR42_RS26760 0.80 -0.4 1,358,079 + RR42_RS26760 0.80 -0.0 1,358,080 - RR42_RS26760 0.80 +0.3 1,358,277 - RR42_RS26765 0.14 -0.3 1,358,277 - RR42_RS26765 0.14 +0.2 1,358,407 - RR42_RS26765 0.38 -1.0 1,358,407 - RR42_RS26765 0.38 +0.0 1,358,467 + RR42_RS26765 0.49 -0.2 1,358,467 + RR42_RS26765 0.49 +0.3 1,358,625 + RR42_RS26765 0.79 -0.1 1,358,802 + +0.1 1,358,803 - +0.3 1,358,812 + -1.5 1,358,813 - +0.4 1,359,125 - RR42_RS26770 0.79 -1.0 1,359,157 - RR42_RS26770 0.86 -0.8 1,359,157 - RR42_RS26770 0.86 -0.8 1,359,172 + -0.0 1,359,172 + -0.1 1,359,174 + -0.2 1,359,174 + +0.7 1,359,175 - -0.9 1,359,517 + RR42_RS26775 0.23 +2.7 1,359,518 - RR42_RS26775 0.23 +0.1 1,359,822 + RR42_RS26775 0.47 -0.2 1,359,822 + RR42_RS26775 0.47 +0.0 1,359,822 + RR42_RS26775 0.47 +0.4 1,360,209 + RR42_RS26775 0.77 +1.1
Or see this region's nucleotide sequence