Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24790

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24785 and RR42_RS24790 are separated by 689 nucleotidesRR42_RS24790 and RR42_RS24795 are separated by 174 nucleotides RR42_RS24785: RR42_RS24785 - NAD-dependent dehydratase, at 898,811 to 899,458 _RS24785 RR42_RS24790: RR42_RS24790 - LysR family transcriptional regulator, at 900,148 to 901,089 _RS24790 RR42_RS24795: RR42_RS24795 - butyryl-CoA dehydrogenase, at 901,264 to 902,412 _RS24795 Position (kb) 900 901 902Strain fitness (log2 ratio) -1 0 1at 899.193 kb on - strand, within RR42_RS24785at 899.193 kb on - strand, within RR42_RS24785at 899.246 kb on + strand, within RR42_RS24785at 899.246 kb on + strand, within RR42_RS24785at 899.295 kb on - strand, within RR42_RS24785at 899.429 kb on - strandat 899.472 kb on + strandat 899.472 kb on + strandat 899.472 kb on + strandat 899.473 kb on - strandat 899.536 kb on + strandat 899.536 kb on + strandat 899.536 kb on + strandat 899.536 kb on + strandat 899.537 kb on - strandat 899.559 kb on + strandat 899.559 kb on + strandat 899.559 kb on + strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.655 kb on + strandat 899.655 kb on + strandat 899.656 kb on - strandat 899.656 kb on - strandat 899.973 kb on - strandat 900.100 kb on + strandat 900.207 kb on - strandat 900.207 kb on - strandat 900.429 kb on - strand, within RR42_RS24790at 900.914 kb on + strand, within RR42_RS24790at 901.204 kb on - strandat 901.226 kb on + strandat 901.226 kb on + strandat 901.348 kb on + strandat 901.349 kb on - strandat 901.349 kb on - strandat 901.384 kb on + strand, within RR42_RS24795at 901.385 kb on - strand, within RR42_RS24795at 901.394 kb on - strand, within RR42_RS24795at 901.594 kb on + strand, within RR42_RS24795at 901.595 kb on - strand, within RR42_RS24795at 902.018 kb on - strand, within RR42_RS24795

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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899,193 - RR42_RS24785 0.59 -0.1
899,193 - RR42_RS24785 0.59 +0.3
899,246 + RR42_RS24785 0.67 -0.9
899,246 + RR42_RS24785 0.67 +0.2
899,295 - RR42_RS24785 0.75 +0.2
899,429 - -0.5
899,472 + -0.5
899,472 + +0.1
899,472 + +0.2
899,473 - +1.4
899,536 + +0.4
899,536 + -0.1
899,536 + -0.3
899,536 + +0.4
899,537 - +0.1
899,559 + +0.0
899,559 + -1.4
899,559 + -0.2
899,560 - -0.9
899,560 - +0.1
899,560 - -0.4
899,560 - +1.4
899,560 - +0.3
899,560 - -1.3
899,655 + +0.4
899,655 + -0.3
899,656 - +0.8
899,656 - -1.0
899,973 - -0.2
900,100 + +0.4
900,207 - -0.1
900,207 - +0.6
900,429 - RR42_RS24790 0.30 -1.2
900,914 + RR42_RS24790 0.81 -0.6
901,204 - -0.3
901,226 + -0.3
901,226 + -0.1
901,348 + -0.4
901,349 - -0.2
901,349 - -0.0
901,384 + RR42_RS24795 0.10 +0.1
901,385 - RR42_RS24795 0.11 -0.5
901,394 - RR42_RS24795 0.11 -0.2
901,594 + RR42_RS24795 0.29 -0.2
901,595 - RR42_RS24795 0.29 +0.8
902,018 - RR42_RS24795 0.66 -0.4

Or see this region's nucleotide sequence