Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24545 and RR42_RS24550 are separated by 714 nucleotides RR42_RS24550 and RR42_RS24555 are separated by 818 nucleotides
RR42_RS24545: RR42_RS24545 - hypothetical protein, at 837,567 to 839,207
_RS24545
RR42_RS24550: RR42_RS24550 - hypothetical protein, at 839,922 to 840,104
_RS24550
RR42_RS24555: RR42_RS24555 - succinate-semialdehyde dehydrogenase, at 840,923 to 842,407
_RS24555
Position (kb)
839
840
841 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 838.937 kb on + strand, within RR42_RS24545 at 838.937 kb on + strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 839.114 kb on - strand at 839.365 kb on + strand at 839.365 kb on + strand at 839.894 kb on + strand at 839.895 kb on - strand at 839.971 kb on - strand, within RR42_RS24550 at 840.064 kb on - strand, within RR42_RS24550 at 840.092 kb on + strand at 840.217 kb on - strand at 840.226 kb on - strand at 840.256 kb on + strand at 840.257 kb on - strand at 840.280 kb on + strand at 840.280 kb on + strand at 840.296 kb on - strand at 840.302 kb on + strand at 840.345 kb on + strand at 840.366 kb on + strand at 840.366 kb on + strand at 840.366 kb on + strand at 840.367 kb on - strand at 840.370 kb on - strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.544 kb on - strand at 840.590 kb on + strand at 840.739 kb on + strand at 840.739 kb on + strand at 840.740 kb on - strand at 840.796 kb on + strand at 840.796 kb on + strand at 840.796 kb on + strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.844 kb on - strand at 840.844 kb on - strand at 840.864 kb on + strand at 840.864 kb on + strand at 840.865 kb on - strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.867 kb on - strand at 840.867 kb on - strand at 840.867 kb on - strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.908 kb on - strand at 840.908 kb on - strand at 840.908 kb on - strand at 840.922 kb on - strand at 840.922 kb on - strand at 840.935 kb on - strand at 840.946 kb on + strand at 840.947 kb on - strand at 840.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 838,937 + RR42_RS24545 0.83 +0.2 838,937 + RR42_RS24545 0.83 -0.8 838,938 - RR42_RS24545 0.84 -0.6 838,938 - RR42_RS24545 0.84 +1.0 839,114 - +1.0 839,365 + -0.2 839,365 + -0.4 839,894 + +1.9 839,895 - +0.9 839,971 - RR42_RS24550 0.27 -0.5 840,064 - RR42_RS24550 0.78 -0.9 840,092 + +0.4 840,217 - -0.1 840,226 - +1.5 840,256 + +1.9 840,257 - -0.0 840,280 + -0.1 840,280 + +1.2 840,296 - +0.8 840,302 + +0.1 840,345 + +0.0 840,366 + +0.2 840,366 + +0.0 840,366 + +0.0 840,367 - +2.9 840,370 - +0.5 840,464 + -1.1 840,465 - -1.7 840,544 - +0.7 840,590 + -0.2 840,739 + +0.8 840,739 + +0.6 840,740 - +0.5 840,796 + -1.1 840,796 + +1.0 840,796 + -0.8 840,797 - +0.9 840,797 - +0.6 840,797 - -1.6 840,797 - +0.2 840,797 - -0.1 840,844 - -0.4 840,844 - +0.4 840,864 + +0.1 840,864 + +0.5 840,865 - -0.3 840,866 + -0.8 840,866 + +0.3 840,866 + -0.3 840,866 + -0.1 840,866 + -0.4 840,866 + -0.5 840,867 - +0.3 840,867 - +0.2 840,867 - +0.4 840,907 + -0.5 840,907 + -1.5 840,907 + -0.5 840,907 + -0.7 840,907 + -0.0 840,907 + +0.0 840,907 + +0.5 840,908 - -0.6 840,908 - +0.9 840,908 - +0.2 840,922 - -2.3 840,922 - -1.0 840,935 - -0.0 840,946 + -0.2 840,947 - -1.1 840,947 - +0.2
Or see this region's nucleotide sequence