Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23950 and RR42_RS23955 are separated by 314 nucleotides RR42_RS23955 and RR42_RS23960 are separated by 75 nucleotides
RR42_RS23950: RR42_RS23950 - hypothetical protein, at 698,762 to 699,469
_RS23950
RR42_RS23955: RR42_RS23955 - hypothetical protein, at 699,784 to 700,311
_RS23955
RR42_RS23960: RR42_RS23960 - hypothetical protein, at 700,387 to 701,844
_RS23960
Position (kb) 699
700
701 Strain fitness (log2 ratio) -1
0
1 at 698.825 kb on + strand at 698.826 kb on - strand at 698.826 kb on - strand at 698.826 kb on - strand at 698.826 kb on - strand at 698.826 kb on - strand at 698.826 kb on - strand at 698.870 kb on + strand, within RR42_RS23950 at 698.924 kb on + strand, within RR42_RS23950 at 699.018 kb on + strand, within RR42_RS23950 at 699.018 kb on + strand, within RR42_RS23950 at 699.210 kb on - strand, within RR42_RS23950 at 699.309 kb on - strand, within RR42_RS23950 at 699.309 kb on - strand, within RR42_RS23950 at 699.309 kb on - strand, within RR42_RS23950 at 699.378 kb on - strand, within RR42_RS23950 at 699.770 kb on - strand at 699.770 kb on - strand at 699.963 kb on + strand, within RR42_RS23955 at 700.033 kb on + strand, within RR42_RS23955 at 700.051 kb on + strand, within RR42_RS23955 at 700.225 kb on + strand, within RR42_RS23955 at 700.225 kb on + strand, within RR42_RS23955 at 700.226 kb on - strand, within RR42_RS23955 at 700.290 kb on + strand at 700.291 kb on - strand at 700.382 kb on - strand at 700.382 kb on - strand at 700.475 kb on - strand at 700.475 kb on - strand at 700.600 kb on + strand, within RR42_RS23960 at 700.600 kb on + strand, within RR42_RS23960 at 700.600 kb on + strand, within RR42_RS23960 at 700.600 kb on + strand, within RR42_RS23960 at 700.600 kb on + strand, within RR42_RS23960 at 700.600 kb on + strand, within RR42_RS23960 at 700.600 kb on + strand, within RR42_RS23960 at 700.601 kb on - strand, within RR42_RS23960 at 700.645 kb on - strand, within RR42_RS23960 at 700.645 kb on - strand, within RR42_RS23960 at 700.931 kb on - strand, within RR42_RS23960 at 700.932 kb on + strand, within RR42_RS23960 at 700.933 kb on - strand, within RR42_RS23960 at 700.953 kb on + strand, within RR42_RS23960 at 701.074 kb on + strand, within RR42_RS23960 at 701.074 kb on + strand, within RR42_RS23960 at 701.075 kb on - strand, within RR42_RS23960 at 701.075 kb on - strand, within RR42_RS23960 at 701.157 kb on + strand, within RR42_RS23960 at 701.158 kb on - strand, within RR42_RS23960 at 701.212 kb on + strand, within RR42_RS23960 at 701.213 kb on - strand, within RR42_RS23960 at 701.213 kb on - strand, within RR42_RS23960 at 701.281 kb on + strand, within RR42_RS23960 at 701.282 kb on - strand, within RR42_RS23960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 698,825 + -0.6 698,826 - +0.2 698,826 - +0.0 698,826 - +0.6 698,826 - +0.2 698,826 - -0.1 698,826 - -0.6 698,870 + RR42_RS23950 0.15 +0.6 698,924 + RR42_RS23950 0.23 -0.1 699,018 + RR42_RS23950 0.36 -0.8 699,018 + RR42_RS23950 0.36 +0.0 699,210 - RR42_RS23950 0.63 -0.4 699,309 - RR42_RS23950 0.77 -0.4 699,309 - RR42_RS23950 0.77 -0.1 699,309 - RR42_RS23950 0.77 -0.1 699,378 - RR42_RS23950 0.87 +0.4 699,770 - -0.3 699,770 - +0.2 699,963 + RR42_RS23955 0.34 -0.5 700,033 + RR42_RS23955 0.47 -0.4 700,051 + RR42_RS23955 0.51 +0.7 700,225 + RR42_RS23955 0.84 +1.2 700,225 + RR42_RS23955 0.84 +1.0 700,226 - RR42_RS23955 0.84 +0.8 700,290 + +0.7 700,291 - -1.3 700,382 - +0.4 700,382 - +0.7 700,475 - +0.4 700,475 - -0.9 700,600 + RR42_RS23960 0.15 -1.7 700,600 + RR42_RS23960 0.15 +0.3 700,600 + RR42_RS23960 0.15 -0.3 700,600 + RR42_RS23960 0.15 -1.1 700,600 + RR42_RS23960 0.15 -0.1 700,600 + RR42_RS23960 0.15 +0.9 700,600 + RR42_RS23960 0.15 +0.5 700,601 - RR42_RS23960 0.15 +1.0 700,645 - RR42_RS23960 0.18 +0.1 700,645 - RR42_RS23960 0.18 +0.5 700,931 - RR42_RS23960 0.37 -0.8 700,932 + RR42_RS23960 0.37 -0.2 700,933 - RR42_RS23960 0.37 -0.2 700,953 + RR42_RS23960 0.39 +0.4 701,074 + RR42_RS23960 0.47 -0.4 701,074 + RR42_RS23960 0.47 +1.0 701,075 - RR42_RS23960 0.47 -0.4 701,075 - RR42_RS23960 0.47 -0.2 701,157 + RR42_RS23960 0.53 +0.9 701,158 - RR42_RS23960 0.53 -0.2 701,212 + RR42_RS23960 0.57 -0.2 701,213 - RR42_RS23960 0.57 -0.9 701,213 - RR42_RS23960 0.57 +0.6 701,281 + RR42_RS23960 0.61 +0.4 701,282 - RR42_RS23960 0.61 -0.2
Or see this region's nucleotide sequence