Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23620 and RR42_RS23625 are separated by 237 nucleotides RR42_RS23625 and RR42_RS23630 are separated by 35 nucleotides RR42_RS23630 and RR42_RS23635 are separated by 293 nucleotides RR42_RS23635 and RR42_RS23640 are separated by 1 nucleotides
RR42_RS23620: RR42_RS23620 - hypothetical protein, at 625,133 to 627,373
_RS23620
RR42_RS23625: RR42_RS23625 - transporter, at 627,611 to 627,931
_RS23625
RR42_RS23630: RR42_RS23630 - hypothetical protein, at 627,967 to 628,956
_RS23630
RR42_RS23635: RR42_RS23635 - flagellar assembly protein FliT, at 629,250 to 629,585
_RS23635
RR42_RS23640: RR42_RS23640 - flagellar biosynthesis protein FliS, at 629,587 to 630,033
_RS23640
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1 at 627.025 kb on - strand, within RR42_RS23620 at 627.199 kb on + strand at 627.290 kb on - strand at 627.291 kb on - strand at 627.291 kb on - strand at 627.315 kb on + strand at 627.316 kb on - strand at 627.355 kb on + strand at 627.365 kb on - strand at 627.365 kb on - strand at 627.521 kb on + strand at 627.522 kb on - strand at 627.628 kb on + strand at 627.679 kb on - strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.712 kb on - strand, within RR42_RS23625 at 627.712 kb on - strand, within RR42_RS23625 at 627.712 kb on - strand, within RR42_RS23625 at 627.787 kb on - strand, within RR42_RS23625 at 627.787 kb on - strand, within RR42_RS23625 at 627.837 kb on + strand, within RR42_RS23625 at 627.882 kb on + strand, within RR42_RS23625 at 628.417 kb on - strand, within RR42_RS23630 at 628.548 kb on - strand, within RR42_RS23630 at 628.706 kb on + strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.721 kb on - strand, within RR42_RS23630 at 628.845 kb on - strand, within RR42_RS23630 at 629.022 kb on + strand at 629.023 kb on - strand at 629.212 kb on + strand at 629.212 kb on + strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.266 kb on + strand at 629.267 kb on - strand at 629.464 kb on + strand, within RR42_RS23635 at 629.465 kb on - strand, within RR42_RS23635 at 629.465 kb on - strand, within RR42_RS23635 at 629.538 kb on + strand, within RR42_RS23635 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.763 kb on - strand, within RR42_RS23640 at 629.763 kb on - strand, within RR42_RS23640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 627,025 - RR42_RS23620 0.84 +1.5 627,199 + +0.7 627,290 - +0.5 627,291 - -0.2 627,291 - +0.5 627,315 + -0.6 627,316 - -1.0 627,355 + -0.2 627,365 - -0.3 627,365 - +0.3 627,521 + +0.8 627,522 - -0.2 627,628 + +0.2 627,679 - RR42_RS23625 0.21 +0.5 627,711 + RR42_RS23625 0.31 -2.4 627,711 + RR42_RS23625 0.31 +0.7 627,711 + RR42_RS23625 0.31 +0.3 627,711 + RR42_RS23625 0.31 +0.4 627,712 - RR42_RS23625 0.31 -0.0 627,712 - RR42_RS23625 0.31 -0.2 627,712 - RR42_RS23625 0.31 +0.1 627,787 - RR42_RS23625 0.55 -0.4 627,787 - RR42_RS23625 0.55 -0.1 627,837 + RR42_RS23625 0.70 -0.0 627,882 + RR42_RS23625 0.84 +0.5 628,417 - RR42_RS23630 0.45 +0.7 628,548 - RR42_RS23630 0.59 +0.3 628,706 + RR42_RS23630 0.75 +1.0 628,707 - RR42_RS23630 0.75 +0.8 628,707 - RR42_RS23630 0.75 +0.4 628,707 - RR42_RS23630 0.75 -0.0 628,721 - RR42_RS23630 0.76 +1.3 628,845 - RR42_RS23630 0.89 -0.1 629,022 + -1.6 629,023 - +0.7 629,212 + +0.5 629,212 + +0.5 629,213 - -0.4 629,213 - +0.1 629,213 - -0.2 629,213 - +0.3 629,266 + +0.2 629,267 - +1.1 629,464 + RR42_RS23635 0.64 +0.1 629,465 - RR42_RS23635 0.64 -0.2 629,465 - RR42_RS23635 0.64 +1.0 629,538 + RR42_RS23635 0.86 -0.3 629,762 + RR42_RS23640 0.39 +0.5 629,762 + RR42_RS23640 0.39 +0.1 629,762 + RR42_RS23640 0.39 +0.1 629,762 + RR42_RS23640 0.39 +1.2 629,763 - RR42_RS23640 0.39 -0.6 629,763 - RR42_RS23640 0.39 +0.2
Or see this region's nucleotide sequence