Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22215 and RR42_RS22220 overlap by 8 nucleotides RR42_RS22220 and RR42_RS22225 overlap by 4 nucleotides RR42_RS22225 and RR42_RS22230 overlap by 4 nucleotides RR42_RS22230 and RR42_RS22235 are separated by 16 nucleotides
RR42_RS22215: RR42_RS22215 - cytochrome o ubiquinol oxidase subunit I, at 322,332 to 324,335
_RS22215
RR42_RS22220: RR42_RS22220 - cytochrome o ubiquinol oxidase subunit III, at 324,328 to 324,984
_RS22220
RR42_RS22225: RR42_RS22225 - cytochrome C oxidase subunit III, at 324,981 to 325,388
_RS22225
RR42_RS22230: RR42_RS22230 - hypothetical protein, at 325,385 to 326,239
_RS22230
RR42_RS22235: RR42_RS22235 - peptidase M19, at 326,256 to 326,885
_RS22235
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.098 kb on + strand, within RR42_RS22215 at 324.265 kb on - strand at 324.265 kb on - strand at 324.267 kb on + strand at 324.268 kb on - strand at 324.268 kb on - strand at 324.268 kb on - strand at 324.398 kb on + strand, within RR42_RS22220 at 324.398 kb on + strand, within RR42_RS22220 at 324.399 kb on - strand, within RR42_RS22220 at 324.399 kb on - strand, within RR42_RS22220 at 324.406 kb on + strand, within RR42_RS22220 at 324.460 kb on + strand, within RR42_RS22220 at 324.461 kb on - strand, within RR42_RS22220 at 324.461 kb on - strand, within RR42_RS22220 at 324.505 kb on + strand, within RR42_RS22220 at 324.506 kb on - strand, within RR42_RS22220 at 324.506 kb on - strand, within RR42_RS22220 at 324.614 kb on - strand, within RR42_RS22220 at 324.614 kb on - strand, within RR42_RS22220 at 324.718 kb on + strand, within RR42_RS22220 at 324.718 kb on + strand, within RR42_RS22220 at 324.719 kb on - strand, within RR42_RS22220 at 324.719 kb on - strand, within RR42_RS22220 at 324.962 kb on - strand at 325.071 kb on - strand, within RR42_RS22225 at 325.087 kb on - strand, within RR42_RS22225 at 325.087 kb on - strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.226 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.239 kb on - strand, within RR42_RS22225 at 325.976 kb on + strand, within RR42_RS22230 at 326.082 kb on - strand, within RR42_RS22230 at 326.133 kb on - strand, within RR42_RS22230 at 326.173 kb on + strand at 326.371 kb on + strand, within RR42_RS22235 at 326.372 kb on - strand, within RR42_RS22235
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 324,098 + RR42_RS22215 0.88 +0.3 324,265 - +0.2 324,265 - -0.5 324,267 + +0.5 324,268 - +2.2 324,268 - -0.1 324,268 - +1.0 324,398 + RR42_RS22220 0.11 -0.7 324,398 + RR42_RS22220 0.11 -0.7 324,399 - RR42_RS22220 0.11 +1.0 324,399 - RR42_RS22220 0.11 -0.3 324,406 + RR42_RS22220 0.12 +0.6 324,460 + RR42_RS22220 0.20 +0.4 324,461 - RR42_RS22220 0.20 +0.0 324,461 - RR42_RS22220 0.20 -0.1 324,505 + RR42_RS22220 0.27 -1.1 324,506 - RR42_RS22220 0.27 +1.0 324,506 - RR42_RS22220 0.27 -1.9 324,614 - RR42_RS22220 0.44 +0.9 324,614 - RR42_RS22220 0.44 +0.2 324,718 + RR42_RS22220 0.59 +0.3 324,718 + RR42_RS22220 0.59 -0.0 324,719 - RR42_RS22220 0.60 +0.3 324,719 - RR42_RS22220 0.60 -0.0 324,962 - -0.0 325,071 - RR42_RS22225 0.22 +0.0 325,087 - RR42_RS22225 0.26 -0.7 325,087 - RR42_RS22225 0.26 -0.6 325,225 + RR42_RS22225 0.60 +0.5 325,225 + RR42_RS22225 0.60 -0.5 325,225 + RR42_RS22225 0.60 +1.0 325,226 - RR42_RS22225 0.60 +0.0 325,228 - RR42_RS22225 0.61 -1.3 325,228 - RR42_RS22225 0.61 -0.5 325,228 - RR42_RS22225 0.61 +0.4 325,239 - RR42_RS22225 0.63 -1.2 325,976 + RR42_RS22230 0.69 +0.6 326,082 - RR42_RS22230 0.82 -2.7 326,133 - RR42_RS22230 0.87 +1.8 326,173 + +0.7 326,371 + RR42_RS22235 0.18 +0.3 326,372 - RR42_RS22235 0.18 -0.6
Or see this region's nucleotide sequence